PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016984t1
Common NameTCM_016984
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 393aa    MW: 44021 Da    PI: 5.3035
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016984t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31551971128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       lp+G++F+P+d el+ e+L++k+   +      ++++  +++e  +i++++P++Lp  ++++ ++++fF+++ ++yatg+rk+r+        
  Thecc1EG016984t1  55 LPAGVKFDPSDAELL-EHLAAKCGVGNskahlfIDEFIpTLEEDkGICYTHPENLP-GANKDGSSVHFFHRTINAYATGQRKRRKiqnqhnsn 145
                       799************.999999877774555442222222444447**********.556678899******************856766665 PP

               NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        ++ +W++tgk+k+v++ +g ++g kk++v+y  ++r  k+ek++Wvmh+y+l
  Thecc1EG016984t1 146 EEHVRWHKTGKTKPVIE-NGVQKGWKKIMVLYksSKRGCKPEKSNWVMHQYHL 197
                       55899************.999***********4434667889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-3640216IPR003441NAC domain
PROSITE profilePS5100529.78755216IPR003441NAC domain
PfamPF023652.3E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MARSWLIDSR AIAKKVKNAS WSSSIRITDC GSNRECPKCH YCIDNSDVTP QWPGLPAGVK  60
FDPSDAELLE HLAAKCGVGN SKAHLFIDEF IPTLEEDKGI CYTHPENLPG ANKDGSSVHF  120
FHRTINAYAT GQRKRRKIQN QHNSNEEHVR WHKTGKTKPV IENGVQKGWK KIMVLYKSSK  180
RGCKPEKSNW VMHQYHLGAE EEEHDGEYVV SKIFYQQQKQ NDKNDDNPMV EEPDTSTIRT  240
SPRTPKTIPP NPPRPWKSMM DDDLDENMQQ EAKFDAEASH VPPHAVQCED GLDYVAWLAG  300
ESQAAETSDL NCLDNLLCDE IMDSSSLLKN SGKNQASYTG SVHSINEVAG NNDVSCGISE  360
LENLDFDTPP DLPLADLQFG SQESILSWLD RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031605.20.0PREDICTED: NAC domain-containing protein 8 isoform X2
TrEMBLA0A061EC790.0A0A061EC79_THECC; NAC domain transcriptional regulator superfamily protein, putative
STRINGEOY025310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-100NAC domain containing protein 44
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]