PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG016914t1 | ||||||||
Common Name | TCM_016914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 16628.5 Da PI: 10.58 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5.1e-15 | 27 | 119 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 k ++ dvlk rl +p ++++ gg +l+++de+g W++ +++rk++ vl++GW+eFv a+ L +gD v+F+ ++++ Thecc1EG016914t1 27 SKRVSRTDVLK--RLAIPTECLAFLprfcGGH---ALELSVRDENGHCWTFVCSIRKTGAYqkPVLQQGWREFVLAKCLHVGDRVTFYEQESE 114 56666666666..4889998886668887555...347***************9855554445*************************43335 PP EE..EEEE CS B3 89 efelvvkv 96 ++ +k+ Thecc1EG016914t1 115 DG---IKI 119 54...555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-18 | 16 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-13 | 24 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-17 | 25 | 109 | No hit | No description |
SMART | SM01019 | 3.7E-7 | 26 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-12 | 30 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.882 | 59 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
MASKGKKAFH ESKAKQKQAK KRRVLFSKRV SRTDVLKRLA IPTECLAFLP RFCGGHALEL 60 SVRDENGHCW TFVCSIRKTG AYQKPVLQQG WREFVLAKCL HVGDRVTFYE QESEDGIKIF 120 GSILPRSRYG IEIEKTMRPL TARPC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021299323.1 | 3e-90 | B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A061ECQ6 | 1e-103 | A0A061ECQ6_THECC; Uncharacterized protein | ||||
STRING | EOY02443 | 1e-104 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16093 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01500.1 | 3e-09 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG016914t1 |
Entrez Gene | 18600787 |
Publications ? help Back to Top | |||
---|---|---|---|
|