PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016909t1
Common NameTCM_016909
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 473aa    MW: 53418.8 Da    PI: 6.9933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016909t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-132352711148
                       HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       llv++v+++G++ W++Ia++++ gR +kqc++rw+++l
  Thecc1EG016909t1 235 LLVQLVTRHGTKKWSLIAKMLN-GRVGKQCRERWHNHL 271
                       79********************.*************97 PP
2Myb_DNA-binding54.13.6e-17277319145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W+++Ed +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+
  Thecc1EG016909t1 277 KDSWSEDEDRILIEAHKEIGNK-WAEIARRLP-GRTENTIKNHWN 319
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.48E-5205259IPR009057Homeodomain-like
PROSITE profilePS5129416.738206271IPR017930Myb domain
SMARTSM007171.0E-7210273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-25212278IPR009057Homeodomain-like
CDDcd001672.48E-12214271No hitNo description
PfamPF002491.9E-11235271IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-27250329IPR009057Homeodomain-like
PROSITE profilePS5129426.038272326IPR017930Myb domain
SMARTSM007173.3E-16276324IPR001005SANT/Myb domain
PfamPF002492.4E-15277319IPR001005SANT/Myb domain
CDDcd001675.05E-13279322No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21279324IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEFETSLRED FPFLSNLFSD NSPLKPDFGN GFPLDGSSSS KGLLHNFILP DHNHYSPSVN  60
NGSLLNPYHF HQFPAEGSSR NPFFGFSSTC TDAFEPYVNG FSNDLNAYIP SLPFAPDGVN  120
NNGFLQGFQS EGCWDFSQKV PPQPLQPETQ TTYQPLIFQD QHGAVTAKVA DEVSCVTGDQ  180
NGYQDKVDQK KNKRFLTRRC SKAPKKSNII KGQWTPQEDS YIYEDLIMPI SFPRLLVQLV  240
TRHGTKKWSL IAKMLNGRVG KQCRERWHNH LRPDIKKDSW SEDEDRILIE AHKEIGNKWA  300
EIARRLPGRT ENTIKNHWNA TKRRQYSRRK GKDSNPKGAL LQSYIKSVSS TSTRKDKGKR  360
VMEANAQMLI NNNPAAKNPQ VVQVQSSDFN PKDWPVAVYN AQADHHQPMN FSFDASVFGE  420
SCTASFESML EEVPSGSLVE ESNAVMDFEL PLEMDSAKKE LDLLEMISQG NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-432083254107B-MYB
1mse_C9e-442093252104C-Myb DNA-Binding Domain
1msf_C9e-442093252104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188205QKKNKRFLTRRCSKAPKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974434.10.0PREDICTED: transcription factor MYB98
TrEMBLA0A061EBY40.0A0A061EBY4_THECC; Myb domain protein 118, putative
STRINGEOY024410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-75myb domain protein 118
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]