PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016792t5 | ||||||||
Common Name | TCM_016792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 366aa MW: 40235.3 Da PI: 9.4995 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.3e-32 | 269 | 322 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG016792t5 269 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 322 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 266 | 322 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 267 | 322 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-24 | 269 | 322 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-7 | 270 | 321 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MPLEGVFVEP SSNPIPDLSL HISPPKASTS MICSKSSEVI DTSFNLLSGH EVSKSNSGTS 60 MISDSQAYTE LSLARPHPAN VMEQERQCRR NSTGGAEQPS HTPLHLTHRH PHPTNTHLNH 120 INHGVSLLDV SNGARPIKGI PVYQNRSFPF PTLENLSRER DPKMCFYQIP YPSSSLYSSS 180 PSLSASPYFG GGLDPISILS SGSTQASPAY RSPATIRFNG ISKDAFKSHQ LHQQPQHSHY 240 GIGSSDTSNG LIRSRFLPKL PTKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL 300 ELMDVKDLTL AHVKSHLQMY RTVKTTDKPA ASSEESCDST PLLNCKNPSL EFTLGRPDWH 360 GTQHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 270 | 324 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974326.1 | 0.0 | PREDICTED: transcription repressor KAN1 isoform X1 | ||||
TrEMBL | A0A061EBA6 | 0.0 | A0A061EBA6_THECC; Homeodomain-like superfamily protein, putative isoform 5 | ||||
STRING | EOY02266 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 6e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016792t5 |
Entrez Gene | 18600680 |
Publications ? help Back to Top | |||
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