PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016647t1

Common Name

TCM_016647

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 290aa MW: 32173.1 Da PI: 9.2314

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016647t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.2e-33	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Thecc1EG016647t1 33 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.455	30	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-32	30	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	33	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	33	88	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-9	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-20	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MERLSYGGGA GGGAVGGENF GYENGVVMTR DPKPRLRWTA DLHDRFVDAV TKLGGPDKAT 60 PKSVLRLMGL KGLTLYHLKS HLQKYRLGQQ ARKQNAVDQN KDNGGSSYVQ FSNHSPGTIT 120 NSPSADNDQR QIPVADALNT HLEVRRTLQE QLEVQKKLQM RVEAQGRYLQ AILEKAHKSL 180 SFDINCEGNV EETRAELTNF NLALSSLMEN VNGGADRKPN VVQMNEVPKK ATSCSAFQNY 240 AVGERERNKD VKLKVEGESI NFDLNTKDSF EFVAVNGNEL QSHMFSYKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-19	33	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-19	33	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-19	33	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-19	33	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578082	2e-31	JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040781.2	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	4e-85	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A061G803	0.0	A0A061G803_THECC; Homeodomain-like superfamily protein, putative
STRING	EOY25282	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016647t1
Entrez Gene	18606865

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]