PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016589t2 | ||||||||
Common Name | TCM_016589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 377aa MW: 42231.1 Da PI: 9.3768 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 198 | 251 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG016589t2 198 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 251 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 195 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 196 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-23 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 199 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNSK PSSTWRRTEE DMDLGFWKRA LDSRNSVSSM AKTDNCFELS 60 LSNPRVSESN SNHLHLLQNG GANCNGNLFH TYHQNQFPHR HNQLQHPVLY QHQQQQQGLG 120 QELGFLRPIR GIPVYQNHPP PTPFPFAQQP LDSSLASSPS SLVTNNTSNT SLSPFQSQGL 180 MRSRFMSRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA 240 HVKSHLQMYR TVKTTDRAAA SSGQSDAFEN GSSGDTSEDL MFDIQNPRRS EISVQQGRPS 300 SNAHQDKEYH GLWSNSSREA WLHGKPKDSA RNLPSLEKDM DPKCLSYERI SDVSSSSLSG 360 TSPKKPNLEF TLGVPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 199 | 253 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040692.2 | 0.0 | PREDICTED: probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 1e-101 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A061G740 | 0.0 | A0A061G740_THECC; Homeodomain-like superfamily protein isoform 1 | ||||
STRING | EOY25194 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-76 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016589t2 |
Entrez Gene | 18606815 |
Publications ? help Back to Top | |||
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