PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016554t1

Common Name

TCM_016554

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 212aa MW: 23596 Da PI: 9.7374

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016554t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.6e-13	14	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lvd+++++ W++ ++ g++R++k+c +rw +yl Thecc1EG016554t1 14 KGPWTGEEDQKLVDYINKHA---WTALPKLAGLNRCGKSCGLRWTNYL 58 79***************8...*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.285	9	62	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-17	12	57	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-8	13	60	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-11	14	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.59E-17	14	104	IPR009057	Homeodomain-like
CDD	cd00167	4.57E-7	16	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-4	58	76	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVGPPCCQDA NLKKGPWTGE EDQKLVDYIN KHAWTALPKL AGLNRCGKSC GLRWTNYLRP 60 DIKRGKFSDE EESIIVGNKN VLLVPIFLRS YDNEIKNYWN SHIKKKLLNM GIDPKTHKPR 120 TDHILNISQL ICAAQLGNLM NPWDTAFKLQ DDAAQLAKTQ LLQNPLQANA GFLGSQYVYP 180 LVNGRSTLSG KESTRTQKTQ SSGSISQTPS N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-18	11	107	4	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287206.1	3e-92	transcription factor MYB39-like
Swissprot	Q9S9Z2	5e-60	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A061G6G8	1e-156	A0A061G6G8_THECC; Myb domain protein 93, putative
STRING	EOY25141	1e-156	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-62	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Thecc1EG016554t1
Entrez Gene	18606785

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]