PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016552t1
Common NameTCM_016552
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 347aa    MW: 38824.5 Da    PI: 6.829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016552t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.1e-201562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lvd+++++G g+W+t +++ g++R++k+c++rw +yl
  Thecc1EG016552t1 15 KGPWTPEEDQKLVDYINKHGHGCWRTLPKHAGLNRCGKSCRLRWANYL 62
                      79********************************************97 PP
2Myb_DNA-binding551.9e-1768112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eE+ ++++++  lG++ W++Ia +++ gRt++++k++w+++
  Thecc1EG016552t1  68 RGKFSEEEERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNFWNTH 112
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26765IPR009057Homeodomain-like
PROSITE profilePS5129419.3831062IPR017930Myb domain
SuperFamilySSF466895.39E-3212109IPR009057Homeodomain-like
SMARTSM007171.4E-161464IPR001005SANT/Myb domain
PfamPF002491.8E-181562IPR001005SANT/Myb domain
CDDcd001671.70E-121762No hitNo description
PROSITE profilePS5129428.27463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2666117IPR009057Homeodomain-like
SMARTSM007178.1E-1767115IPR001005SANT/Myb domain
PfamPF002495.5E-1668112IPR001005SANT/Myb domain
CDDcd001673.75E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRSPCCSDE ANLKKGPWTP EEDQKLVDYI NKHGHGCWRT LPKHAGLNRC GKSCRLRWAN  60
YLRPDIKRGK FSEEEERIII NLHSVLGNKW SKIATHLPGR TDNEIKNFWN THIRKKLLNM  120
GLDPNTHKSR TDINHLFNLS QLLCAAQLGN LMNPWDSTAF KVQADAAELA KIQLLQNLMQ  180
ILNTKKLSNV RAGLVGSQNS CPFEGVGLVN GTSSVYANKT ASIPQNFQSA GSMTQTSSDY  240
QQGVDNSWAC FEGEFKYESR DMNDKCLSSS CDFQTDNSLS ALVSESSEIA SMNQMEHKTN  300
TNHCSTISAD TSIFQAWEKL MDDETGDSYW KDILDLTSSS SSPIEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32121174108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972642.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A061GDM60.0A0A061GDM6_THECC; Myb domain protein 39, putative
STRINGEOY251390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.15e-92myb domain protein 39
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]