PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016551t1
Common NameTCM_016551
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 342aa    MW: 38256.7 Da    PI: 5.107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016551t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lvd++++ G g+W+t ++  g++R++k+c++rw +yl
  Thecc1EG016551t1 15 KGPWTPEEDQKLVDYINKNGLGSWRTFPKLAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding53.55.4e-1768112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eE+  +++++  lG++ W++Ia +++ gRt++++k++w+++
  Thecc1EG016551t1  68 RGKFTEEEERVIINLHSVLGNK-WSRIATHLP-GRTDNEIKNFWNTH 112
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9381062IPR017930Myb domain
SuperFamilySSF466892.3E-3112109IPR009057Homeodomain-like
SMARTSM007171.2E-121464IPR001005SANT/Myb domain
PfamPF002491.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-241669IPR009057Homeodomain-like
CDDcd001671.15E-91762No hitNo description
PROSITE profilePS5129428.01563117IPR017930Myb domain
SMARTSM007176.1E-1667115IPR001005SANT/Myb domain
PfamPF002492.6E-1568112IPR001005SANT/Myb domain
CDDcd001671.62E-1170113No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRSPCCAED ANLKKGPWTP EEDQKLVDYI NKNGLGSWRT FPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTEEEERVII NLHSVLGNKW SRIATHLPGR TDNEIKNFWN THIRKKLLNM  120
GIDPHTHKPR TDLDHLLNLS QLLCAAQLGN LMNPWDNAFK LQADAAQLAK AQLLQNLMQI  180
INTNKLANVE SAAGFPGSQN PYSFEGLLNG TSTLSAKEQT PQTQNIQNNG GAIPQASSEY  240
EAAENPWAYF QGGVNYESLD MNNQSFSNSF EQTENPLPEL VSGSPETSPI TQMENKTATA  300
PDSTIYDFEA WEKLIMEDEG DGSYWKEILE FTSSSSSPIS W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31121174108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974072.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A061G6W50.0A0A061G6W5_THECC; Myb domain protein 39, putative
STRINGEOY251380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.17e-85myb domain protein 39
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]