PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016519t1 | ||||||||
Common Name | TCM_016519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 38800 Da PI: 5.1215 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 5.9e-05 | 11 | 36 | 1 | 26 |
CHHHHHHHHHHHHHHHHHHHHHHHCT CS HLH 1 rrrahnerErrRRdriNsafeeLrel 26 +r a+ner+r+RR+ ++ fe+L+ + Thecc1EG016519t1 11 QRSAKNERDRQRRRGLKLEFERLQNV 36 799********************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MVQSRALSPA QRSAKNERDR QRRRGLKLEF ERLQNVAAKY QEMAPLLDEL RVEVTTVRNV 60 ISQLAEESRR LNDVEPHLTR KIHQLDNIVR QNQTEQIERR QLLSQWQFKT QAMVLPTIGK 120 EASNEPIDLG VESSRSDIWY TDEFLQDFIE KLDDKEKSRV DFLDFKGLPE ELEKCGRFSL 180 PPSLVPIHEI LDKAYGDITA ESNQSNPVIR DSYILFCSVI KEMNEVQLEQ VDLDKMILWR 240 DAINSGLSIG FRGNFAIEHL KKIARAYFGS KAWNDQELKS LEERMSELKA ELYGLEQQHY 300 SIIERQSSEM CRECLQDQQY FQGKPLSTGL FLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 23 | DRQRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040603.2 | 0.0 | PREDICTED: uncharacterized protein LOC18606755 | ||||
TrEMBL | A0A061GDI7 | 0.0 | A0A061GDI7_THECC; Fiber protein Fb17 | ||||
STRING | EOY25104 | 0.0 | (Theobroma cacao) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016519t1 |
Entrez Gene | 18606755 |
Publications ? help Back to Top | |||
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