PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016510t1

Common Name

TCM_016510

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 985aa MW: 107729 Da PI: 4.9537

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016510t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.4e-29	577	627	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Thecc1EG016510t1 577 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 627 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	566	647	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	580	627	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.83E-22	880	972	No hit	No description
SMART	SM00666	8.2E-24	888	970	IPR000270	PB1 domain
PROSITE profile	PS51745	24.401	888	970	IPR000270	PB1 domain
Pfam	PF00564	6.0E-17	889	969	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-26	889	969	No hit	No description
CDD	cd06407	3.27E-37	889	969	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MCEPEEDNAC PSPPKQQQQL QGIMDLDDLD LESSWPLDQP TFLSNPTSPL IISSSSEQPC 60 SPLWAFSDED KVGSAAGYNL FLTCTPKPVN ENPKEDNDKR GIPSPFLGLL PLENPDSYCV 120 IKERMTQALR YFKDSTEQHV LAQVWAPIKS GGRYVLTTSG QPFVLDPHSN GLHQYRMVSL 180 MYMFSVDGES DGQLGLPGRV FRQKLPEWTP NVQYYSSKEY SRLDHALHYN VRGTLALPVF 240 EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SDILDPPSTQ ICNENRQNAL 300 AKILEILTVV CETYKLPLAQ TWVPCRHRSV LAYGGGLKKS CTSFDGSCMG QVCMSTTDVA 360 FYVVDAHMWG FREACLEHHL QKGQGVAGRA FLSRNSCFCT DITQFCKTEY PLVHYARMFR 420 LTSCFAICLR STYTGDDDYV LEFFLPPAIA DSNEQQTLLR SILATMKQHF QSLKVASGAE 480 LEDDEGSIEI IEASSDERLD SRLESIPIPP SVKSPPGPNT SPNRGELQLD SSKQQLIVTF 540 DPATDGGNVV ASGSQNPVCL PQNKDVKKSE RKRGKTEKSI SLEVLQQYFA GSLKDAAKSL 600 GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKHVIES VQGADGAFGL TSIATSPLPV 660 AVGSISWPTS LNGSNQQNSP NSKPSDPQGE KYDLPTCRTP VSNGQALVED QLLGGMTLSQ 720 EELFLQQNAL SPDLNKGANR SKTGSGSREE SAGTPTSHGS CQGSPAIESA ATKDPLSSIQ 780 EQCFKARGSP ELAFQPIGEL NIPATFSMPE ALVATEPQEP FGGMLVEDAG SSKDLRNLCP 840 SVADVGIDER FPESSWTPPP CTDLALMQAM ATFTQTTPHA TARQEMRSLT IKATYREDII 900 RFRISLSSGI VELKEEVAKR LKLEVGTFDI KYLDDDSEMV LIACDADLQE CLDVSRSSGS 960 NIIRLSVHDA MANLGSSCES TGEL*

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MCEPEEDNAC PSPPKQQQQL QGIMDLDDLD LESSWPLDQP TFLSNPTSPL IISSSSEQPC  60
SPLWAFSDED KVGSAAGYNL FLTCTPKPVN ENPKEDNDKR GIPSPFLGLL PLENPDSYCV  120
IKERMTQALR YFKDSTEQHV LAQVWAPIKS GGRYVLTTSG QPFVLDPHSN GLHQYRMVSL  180
MYMFSVDGES DGQLGLPGRV FRQKLPEWTP NVQYYSSKEY SRLDHALHYN VRGTLALPVF  240
EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SDILDPPSTQ ICNENRQNAL  300
AKILEILTVV CETYKLPLAQ TWVPCRHRSV LAYGGGLKKS CTSFDGSCMG QVCMSTTDVA  360
FYVVDAHMWG FREACLEHHL QKGQGVAGRA FLSRNSCFCT DITQFCKTEY PLVHYARMFR  420
LTSCFAICLR STYTGDDDYV LEFFLPPAIA DSNEQQTLLR SILATMKQHF QSLKVASGAE  480
LEDDEGSIEI IEASSDERLD SRLESIPIPP SVKSPPGPNT SPNRGELQLD SSKQQLIVTF  540
DPATDGGNVV ASGSQNPVCL PQNKDVKKSE RKRGKTEKSI SLEVLQQYFA GSLKDAAKSL  600
GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKHVIES VQGADGAFGL TSIATSPLPV  660
AVGSISWPTS LNGSNQQNSP NSKPSDPQGE KYDLPTCRTP VSNGQALVED QLLGGMTLSQ  720
EELFLQQNAL SPDLNKGANR SKTGSGSREE SAGTPTSHGS CQGSPAIESA ATKDPLSSIQ  780
EQCFKARGSP ELAFQPIGEL NIPATFSMPE ALVATEPQEP FGGMLVEDAG SSKDLRNLCP  840
SVADVGIDER FPESSWTPPP CTDLALMQAM ATFTQTTPHA TARQEMRSLT IKATYREDII  900
RFRISLSSGI VELKEEVAKR LKLEVGTFDI KYLDDDSEMV LIACDADLQE CLDVSRSSGS  960
NIIRLSVHDA MANLGSSCES TGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973247.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A061G5G4	0.0	A0A061G5G4_THECC; Transcription factor, putative
STRING	EOY25090	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Thecc1EG016510t1
Entrez Gene	18606747

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]