PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016500t1
Common NameTCM_016500
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 699aa    MW: 77954.8 Da    PI: 6.557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016500t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24130230198
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+kvlt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  Thecc1EG016500t1 130 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 220
                       99****************************9555556679************************************************..449 PP

                       EE..EEEEE- CS
                B3  89 efelvvkvfr 98 
                       ++el+v+v+r
  Thecc1EG016500t1 221 NGELCVGVRR 230
                       999*****98 PP
2Auxin_resp105.18.1e-35256335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st++ F v+Y+Pr+  s+F++ ++++++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++S+WrsLk
  Thecc1EG016500t1 256 ASHAVSTQTLFVVYYKPRT--SQFIIGLNRYLEALNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWKDSQWRSLK 335
                       789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-41121245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-40123259IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-21128230No hitNo description
PROSITE profilePS5086312.28130232IPR003340B3 DNA binding domain
PfamPF023622.0E-22130230IPR003340B3 DNA binding domain
SMARTSM010197.1E-24130232IPR003340B3 DNA binding domain
PfamPF065075.0E-32256335IPR010525Auxin response factor
PfamPF023093.2E-7563622IPR033389AUX/IAA domain
SuperFamilySSF542773.41E-15580662No hitNo description
PROSITE profilePS5174526.456586667IPR000270PB1 domain
PfamPF023092.0E-6632670IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MMANRGGSFS QTNNVSSEGD GVDDLYMELW KLCAGPLVEV PRANERVYYF PQGHMEQLEA  60
STNQELNQRI PLFNLPPKIL CRVVHIQLLA EQETDEVYAQ ITLLPEANQP EPTSPDQSPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MNQATPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELCVGVRR VARQQSSMPS  240
SVISSQSMHL GVLATASHAV STQTLFVVYY KPRTSQFIIG LNRYLEALNN KFAVGMRFKM  300
RFEGEDSPER RFSGTIVGVE DFSPHWKDSQ WRSLKVQWDE PASIPRPDRV SPWEIEPFAA  360
PIPPTLGQPL AAKNKRPRPP TEIPALDLSS TASAPWNSGV MHSHDLTRRN ITAEAKRNEN  420
HVMWHHMQTD MNSNCSSISK TQNEGSWLSS PGMSVSQHLF PDGREDSKSV SGWPVLSGFS  480
KQQLKNESTF DPIEKVKKFE TASSCRLFGI ELINHSASST PLERTPTQLS TMTGGSTEGH  540
GQSSLSPADS DQKSEISKDS KGKKQEQLQV SAKEIQSRQS CSSSTRSRTK VQMQGVAVGR  600
AVDLTMLEGY DQLIDELEEM FDIKGGLRPR NKWEIVYTDD EGDMMLVGDD PWLEFCNMVR  660
RIFICSSQDV KKMSTGSKLP MASIEVEGTV ISSDSAEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17793581355Auxin response factor 1
4ldw_A1e-17793581355Auxin response factor 1
4ldw_B1e-17793581355Auxin response factor 1
4ldx_A1e-17793581355Auxin response factor 1
4ldx_B1e-17793581355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040576.20.0PREDICTED: auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A061G7E10.0A0A061G7E1_THECC; Auxin response factor
STRINGEOY250770.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]