PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016452t1
Common NameTCM_016452
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 311aa    MW: 34543.7 Da    PI: 9.4283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016452t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19112162256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p +   r+r++lg++ tae Aa a+++a+ kl+ge
  Thecc1EG016452t1 112 LYRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYETAEAAAYAYDRAAYKLRGE 162
                       59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-16111171No hitNo description
PROSITE profilePS5103223.275112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31112170IPR001471AP2/ERF domain
SMARTSM003807.7E-37112175IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22112169IPR016177DNA-binding domain
PRINTSPR003672.2E-10113124IPR001471AP2/ERF domain
PfamPF008471.7E-13113162IPR001471AP2/ERF domain
PRINTSPR003672.2E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQDNNLPFGF NNSADIGSSL SQIILSGGSN TLDSIFSHCA QSTTTSTAMN TNSVYEPLGS  60
SVYLRQRDLL SKFCQESKGN ALVSRNSLTK LQSYRNPASS SNYTSPQKKK KLYRGVRQRH  120
WGKWVAEIRL PQNRTRVWLG TYETAEAAAY AYDRAAYKLR GEYARLNFPN LKDPSKLGFR  180
DSARLNALKN MVDAKIQAIC QKVKRERANA KKKSNSDRPA ASSEAEKEVN VTESCSSSSS  240
LSRAVFSDNL SNELLSPTVS KDGFWRCENS PSSVSNDYPM MMAEEPGFED CSLARMPSFD  300
AELIWEILAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20111169160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20109169263ATERF1
3gcc_A4e-20109169263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040501.20.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W25e-68ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A061G7370.0A0A061G737_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY250020.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-55ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]