PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016396t1 | ||||||||
Common Name | TCM_016396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 342aa MW: 38200.1 Da PI: 4.7461 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 124 | 174 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Thecc1EG016396t1 124 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 174 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.38E-32 | 124 | 181 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-21 | 125 | 182 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.578 | 125 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-30 | 125 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 125 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-38 | 125 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDHCPVPTIK YTEHRNQTKL LTPLLNVRLE NQPEMKPRIV RISVTDADAT DSSSDEEEEQ 60 TTRFRSRNRV KKFVNEITIE SSCPTQNDAV WRSKSSSLSK IPRKRPAAVA EAKAKSPAKV 120 PAGKKFRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE AAMVYDNAAI QLRGPDALTN 180 FTTPPQKLVQ DNNSQKPLSS SDYNSGEESH NTNLCSPTSV LRCPSLSTDE VDSQSVKESR 240 EIGSEPQDAL DESCCISGEN FSGFSDYSSF FPNDIFSSVP DLFDDNTSFH EAFMKDDFGN 300 GFLSSGEDFE FGFGSFSNWQ HVDDHFQDIG DLFATDSLLA V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 123 | 181 | 3 | 62 | ATERF1 |
3gcc_A | 1e-20 | 123 | 181 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021282590.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A061G6W1 | 0.0 | A0A061G6W1_THECC; Cytokinin response factor 2, putative | ||||
STRING | EOY24932 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-55 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016396t1 |
Entrez Gene | 18606645 |
Publications ? help Back to Top | |||
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