PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016261t6
Common NameTCM_016261
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 455aa    MW: 51075.6 Da    PI: 4.8984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016261t6genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12260306455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   ErrRR+++N++f  L++l+P+       + +K++iL  ++ Y+++L+
  Thecc1EG016261t6 260 NHVLSERRRREKLNERFMILKSLVPSV-----SRADKVSILDDTIGYLQDLE 306
                       79999*********************6.....49***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.171256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-10259306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-17260317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17260322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-13260310No hitNo description
SMARTSM003531.1E-15262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MVLEDLSLIQ RIKTSFLDTP HPIGSYKSIP VAGSTGNDKD LACPALEPQI PDTKLSPLLG  60
CEQLEMASPN DSSDGFEPNQ PAEDSFMVEG INGGASQVQS WQFMEEEFSN CVHHSLNSSD  120
CISQTFVDHG NVVPLCKGEN DNDNGLQDVQ ECNQTKLTSL DIRSDDLHYQ TVLSALLKTS  180
HQLILGPHFR NSNQESSFMR WKRNGLVKSQ KAGDETPQKL LKKILFEVPQ MHDKGLLDSP  240
EDNGIRDAAW RPEADEICGN HVLSERRRRE KLNERFMILK SLVPSVSRAD KVSILDDTIG  300
YLQDLERRVE ELESCRELTD LEARMKRKPQ DHVERTSDNY GNNKMTNGKK PSLNKRKACD  360
IDGAELEIDY VASKDGSTEN VTVSMSNKDF LIEFRCPWRE GILLEIMDAL SILNLDCHSV  420
QSSTTEGILS LTIESKVRLF CMCFIRKSLG NQIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269ERRRRE
2265270RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040249.20.0PREDICTED: transcription factor EGL1
TrEMBLA0A061GCJ50.0A0A061GCJ5_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 6
STRINGEOY247500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-120bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]