PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016134t1
Common NameTCM_016134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 260aa    MW: 29074.2 Da    PI: 8.1329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016134t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-1291141355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+++ + +++Lr llP       ++K s ++   +Av+YIk+Lq
  Thecc1EG016134t1  91 IIHRDIERQRRQEMTTLYSTLRLLLPLeY---LKGKRSISDHMHEAVKYIKHLQ 141
                       5699***********************77...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-486144No hitNo description
SuperFamilySSF474593.01E-1487163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.99588140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-992141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1092159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-494146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDRSQSKRYR GDLGLRNMDC AASEFPSEES TVELFQFFSI PCQQDSSNPK QDEQNLILVS  60
KKSDCSRGKR KAATAFGVED GNAPDSKGKK IIHRDIERQR RQEMTTLYST LRLLLPLEYL  120
KGKRSISDHM HEAVKYIKHL QNRITELSDK REELKRSSNL HTPSSMPESS PDCSEDSVVV  180
RGCMVGVEIA INTGLRPGLP LSNVLDVIVA EGLSVVNCIS TKVNERLLHT IVLEVNDGRS  240
IELSELQQKL TKLIIRPPG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040062.10.0PREDICTED: transcription factor bHLH118
TrEMBLA0A061G5720.0A0A061G572_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY245630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-34bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]