PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016012t1
Common NameTCM_016012
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 309aa    MW: 34287.2 Da    PI: 10.2827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016012t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31240297359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++prsYY+C+s  gCp++k+ver+ edp+++++tYeg+H+h+
  Thecc1EG016012t1 240 DDYSWRKYGQKPIKGSPYPRSYYKCSSMrGCPARKHVERCLEDPTMLVVTYEGDHKHS 297
                       99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-16195236IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.6E-33226298IPR003657WRKY domain
PROSITE profilePS5081129.218233299IPR003657WRKY domain
SuperFamilySSF1182901.44E-26236297IPR003657WRKY domain
SMARTSM007742.9E-36238298IPR003657WRKY domain
PfamPF031062.3E-26240296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTEASGVCVS MTPRWDSKVH EVAQSSFRRA NHLFSCISDQ SQKRSIQEVS LMAQDAVNGF  60
RKLLTLLDGS RGSDCKRIRK GPLPKSHKVK PIEFMDSPNF APQSSGYKSS QPHIPRQSVS  120
PQTNQSNTGL IPRNVVVLPN SIMGLHQSSI LPSISMFRLD ARSNMDKKTI PQSSSEILVS  180
QDESCLFPSK RKVGTESEEA STKCAASTGG CHCSKGRKLR IKKTVRVPAV SNKLSDIPPD  240
DYSWRKYGQK PIKGSPYPRS YYKCSSMRGC PARKHVERCL EDPTMLVVTY EGDHKHSRIT  300
FQPSNVMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21226296271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697961e-122KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974063.10.0PREDICTED: probable WRKY transcription factor 17 isoform X1
TrEMBLA0A061GBH00.0A0A061GBH0_THECC; WRKY DNA-binding protein 21, putative
STRINGEOY244040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-54WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]