PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015933t1 | ||||||||
Common Name | TCM_015933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29440.9 Da PI: 8.6107 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62 | 1.2e-19 | 83 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++++k +G ++WktIa + g+ R++k+c++rw++yl Thecc1EG015933t1 83 KGAWTAEEDRKLAEYIKIHGAKRWKTIAIKAGLSRCGKSCRLRWLNYL 130 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 136 | 181 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Thecc1EG015933t1 136 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 181 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.239 | 78 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 82 | 132 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.98E-29 | 82 | 177 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-17 | 83 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-25 | 84 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-11 | 85 | 130 | No hit | No description |
PROSITE profile | PS51294 | 26.508 | 131 | 185 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 135 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 136 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 138 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-10 | 140 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGWTLTDHSI LSHQAKLSHV LYSTSLLVFP VKVTLTXXXX XXXXXXXYLL LSLSLSLSLS 60 LCPFSQWQMA PKKDGVSKRV MNKGAWTAEE DRKLAEYIKI HGAKRWKTIA IKAGLSRCGK 120 SCRLRWLNYL RPNIKRGNIS DEEEDLILRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSH 180 LSKKINQEKT EQTSTSEQTV PQQTWETVQM VEEVAKGSDE NLELSFDANE FFDFSTQGCF 240 GLDWVNKFLE LDDQTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 81 | 185 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ868558 | 1e-157 | JQ868558.1 Gossypium thurberi isolate D1 MYB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972299.1 | 1e-152 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | A0A061GB73 | 1e-179 | A0A061GB73_THECC; Myb domain protein 5 | ||||
STRING | EOY24284 | 1e-180 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 6e-53 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015933t1 |
Entrez Gene | 18606229 |
Publications ? help Back to Top | |||
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