PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015902t1
Common NameTCM_015902
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 333aa    MW: 37064.4 Da    PI: 5.9711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015902t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20183233255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ +l+g
  Thecc1EG015902t1 183 HYRGVRQRP-WGKFAAEIRDPTRRG--SRIWLGTFDTAIEAAKAYDQAAFRLRG 233
                       8********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32182242IPR001471AP2/ERF domain
CDDcd000183.95E-30182241No hitNo description
SuperFamilySSF541711.77E-22183242IPR016177DNA-binding domain
PROSITE profilePS5103224.105183241IPR001471AP2/ERF domain
PfamPF008473.9E-14183233IPR001471AP2/ERF domain
SMARTSM003801.1E-36183247IPR001471AP2/ERF domain
PRINTSPR003671.9E-13184195IPR001471AP2/ERF domain
PRINTSPR003671.9E-13223243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
METSSEVSCA LQYIKQYLLD EFSPVGLGST FSCKYQWITE AKPEVSTSQS ESLYSQTSSS  60
DSSLTVSNFN CLDDDDFFRF SPHFPGFKPN GSDVFKFESK PQIVDLTTPK SLSSNASAFE  120
FEEKPQIVAL SATNPQASLN SSSQNRKPSL KISLPNKVEW IQFGKPDLAQ VEPKNSNSED  180
RKHYRGVRQR PWGKFAAEIR DPTRRGSRIW LGTFDTAIEA AKAYDQAAFR LRGSKAILNF  240
PLEAGRLNAR DVDGERKRCR DDGEGAERQV KAVKRENDDV TKARDNGDVP LTPSNWASLL  300
DWDTDVKGIF NVPPLSPLSP YPSLGFPQVM VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29182242161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974037.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803418e-71EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A061GB420.0A0A061GB42_THECC; Ethylene response factor 5, putative
STRINGEOY242390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-64ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]