PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015870t1 | ||||||||
Common Name | TCM_015870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GATA | ||||||||
Protein Properties | Length: 539aa MW: 59881.1 Da PI: 7.0009 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Thecc1EG015870t1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 7.22E-17 | 6 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 4.1E-9 | 280 | 365 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDDYEDH 60 RASRVKSISI NKNKEIKLLK RKPNHDTAVV APDYNQGFRK FVDEDTSNRS SSGSAISNSE 120 SCAQFGSGDA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQSSYF 180 SGSSEEDLLL ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVENK QYSMNEAYSH 240 SSSFPTHNDS EGIKFSGHGF EKAKNPAGQG MQHEQLKRDK VQHEKSLILE SHKSPLCNID 300 LNDILNFEEF VKHITNEDQQ LLLKYLPPLD IVKLPDSLKS MFDSPQFKEN LCYFQQLLEE 360 GVFNISVPGV KAEDCKTLKR LALFNLTKSH WVERHNVLKK YRSGTGGSAI ARGPNAITSN 420 NMIIMKRSRD SQSQNFPEAR TLKSPKRVIM KTTYENKELI DNDGSCFSPR SLFALPPDGS 480 SLMLDSLHFV DESSDHDLLL DVPSNGSFPQ AELLHPTLSF GQQASTSSSS AHPHLVHP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039698.1 | 0.0 | PREDICTED: GATA transcription factor 26 | ||||
Swissprot | Q8W4H1 | 1e-159 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A061GB10 | 0.0 | A0A061GB10_THECC; GATA transcription factor, putative isoform 1 | ||||
STRING | EOY24199 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-137 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015870t1 |
Entrez Gene | 18606174 |
Publications ? help Back to Top | |||
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