PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015844t1

Common Name

TCM_015844

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 475aa MW: 53309.5 Da PI: 9.6254

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015844t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.8	1.4e-23	23	111	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+k+e+laLiea++e++ +lrrg+lk+p+W++vs ++ ++ g ++s++qC++k+e+l+kry+++k+++ k+ + ss++ +f l+ Thecc1EG015844t1 23 CWSKEETLALIEAYKEKWFALRRGNLKAPDWDAVSTAVtsaADPGTTKSSVQCRHKIEKLRKRYRAEKQRSLKNPGKFSSSWDLFPLLD 111 7***********************************999999*************************99999*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.002	20	85	IPR001005	SANT/Myb domain
Pfam	PF13837	9.4E-22	22	113	No hit	No description
PROSITE profile	PS50090	6.156	24	83	IPR017877	Myb-like domain
SMART	SM00595	0.0056	31	118	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSTPTSPPQS SSATATRRVP PPCWSKEETL ALIEAYKEKW FALRRGNLKA PDWDAVSTAV 60 TSAADPGTTK SSVQCRHKIE KLRKRYRAEK QRSLKNPGKF SSSWDLFPLL DSMSFASTLV 120 AGSDDQDHTV DSKVSVFDGF GLKLKNREWI DGNSGSNIGF DHDLRGGYGS NFDFDHKFEG 180 RYGVKLQGNR DFVAKGIKFK SNGRLGDGYG SMVDFDHNFV EGVDNVGEFP LKTLGDRNLV 240 NPEFKPKNFG SPNLNYDYYN DLEEYGIDEG MGFLGKVSSA WDSVPQGFHP KKCGRVDRTT 300 EVDCRGLNGF ASSSRPGLGR KNGGVRVKKG VDPVEEMVSS IKLLAEGFVR MEKMKMEMVK 360 EIEKMRMEME MKHNEMILES QQKIVDAFAK ALLEKKKRKK KPSALSPNVN GNAVEEWQSD 420 DMIKKKKDDG NSKLGYFLSS NFNLRVVSKT PSVTVTQLWQ PYIYFYANFL MIKD*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSTPTSPPQS SSATATRRVP PPCWSKEETL ALIEAYKEKW FALRRGNLKA PDWDAVSTAV  60
TSAADPGTTK SSVQCRHKIE KLRKRYRAEK QRSLKNPGKF SSSWDLFPLL DSMSFASTLV  120
AGSDDQDHTV DSKVSVFDGF GLKLKNREWI DGNSGSNIGF DHDLRGGYGS NFDFDHKFEG  180
RYGVKLQGNR DFVAKGIKFK SNGRLGDGYG SMVDFDHNFV EGVDNVGEFP LKTLGDRNLV  240
NPEFKPKNFG SPNLNYDYYN DLEEYGIDEG MGFLGKVSSA WDSVPQGFHP KKCGRVDRTT  300
EVDCRGLNGF ASSSRPGLGR KNGGVRVKKG VDPVEEMVSS IKLLAEGFVR MEKMKMEMVK  360
EIEKMRMEME MKHNEMILES QQKIVDAFAK ALLEKKKRKK KPSALSPNVN GNAVEEWQSD  420
DMIKKKKDDG NSKLGYFLSS NFNLRVVSKT PSVTVTQLWQ PYIYFYANFL MIKD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	393	401	EKKKRKKKP
2	394	400	KKKRKKK
3	395	399	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972171.1	0.0	PREDICTED: uncharacterized protein LOC18606151
TrEMBL	A0A061G3R0	0.0	A0A061G3R0_THECC; Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative
STRING	EOY24171	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015844t1
Entrez Gene	18606151

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]