PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015780t3
Common NameTCM_015780
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARR-B
Protein Properties Length: 557aa    MW: 61550.2 Da    PI: 6.434
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015780t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27318371256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        +++WtpeLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Thecc1EG015780t3 318 LKVDWTPELHKQFVQAVDQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                       5899****************.********************************96 PP
2Response_reg25.75.6e-10201261109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+ d++ + +  +r+ le  +y +v ++ +  eal  +  +   +++ ++ ++  + +G+  +k +++++ +lp i+ +     +++ +++ 
  Thecc1EG015780t3  20 VLLLDEDSNSAAEIRSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEVNTNNNNGS--FKFLETAK-DLPTIMTSNIHCISTMMKCIA 108
                       789999999999***********.***************666666**************97..67777766.999*99999889********* PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                       +Ga +fl Kp ++++l++
  Thecc1EG015780t3 109 LGAVEFLRKPLSEDKLRN 126
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-1516154No hitNo description
SuperFamilySSF521723.7E-1516134IPR011006CheY-like superfamily
PROSITE profilePS5011020.19619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.12E-721131No hitNo description
PROSITE profilePS5129415.399314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-27315374IPR009057Homeodomain-like
SuperFamilySSF466893.76E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24317371IPR006447Myb domain, plants
PfamPF002494.8E-8320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVCTANDLSA WKDFPKGLRV LLLDEDSNSA AEIRSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE VNTNNNNGSF KFLETAKDLP TIMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG KDLSESLKPA KESVVSMLHL QMENGIPMNE DSDKTEDASL  180
VYEIDRQPSP GSDKYPAPST PQLKQGERLL DDGDCPEHTN CSTEKESGEQ DGESKSVETT  240
SGNAIAEVTA PVGQPQGSRE TEVKEVADLV DGNKGESTVH SHPKNRVNRK DSQAGAEKPS  300
TVSGLHSSCL NKANRKKLKV DWTPELHKQF VQAVDQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRRHILPKED DRRWPQRDQT QRSCYPHKPI MAFPPYHSNH VVPVGPLYPM  420
WGAPPHPANI QMWGSPGYPP WQPAESWHWK PYPGFQADAW GCPVMPPPPG YCSAFTQNAS  480
GFHCSSTMDN RSGMPQNSVE HQPAEEVIDN VVKEAINKPW LPLPLGLKPP STEGVLAELS  540
RQGISAVPPH VNGSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16322371655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039580.20.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_017973601.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-156APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A061G3D10.0A0A061G3D1_THECC; CheY-like two-component responsive regulator family protein isoform 1
STRINGEOY240790.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-160ARR-B family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]