PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015740t1
Common NameTCM_015740
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LSD
Protein Properties Length: 146aa    MW: 15046.5 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015740t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132852125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr+lL YP GA+sV+Ca+C++V
  Thecc1EG015740t1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                      ************************9 PP
2zf-LSD146.84.9e-156791125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggC+tlL+Y rGA+sV+C++C+tV
  Thecc1EG015740t1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                      ************************9 PP
3zf-LSD141.91.7e-13105129125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+Cr lL+Y +GA+sV+Ca+C++V
  Thecc1EG015740t1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                       ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.3E-424126No hitNo description
TIGRFAMsTIGR010539.8E-132555IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.49E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.7E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SVGASASATE QKFNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039533.11e-100PREDICTED: protein LOL1
RefseqXP_007039534.11e-100PREDICTED: protein LOL1
SwissprotQ93ZB15e-82LOL1_ARATH; Protein LOL1
TrEMBLA0A061G2E07e-99A0A061G2E0_THECC; Lsd one like 1 isoform 1
STRINGEOY240351e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-68lsd one like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]