PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015694t1
Common NameTCM_015694
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 305aa    MW: 34044.1 Da    PI: 8.1461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015694t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.6e-1499150155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Thecc1EG015694t1  99 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 150
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1797169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.79E-1397154No hitNo description
PROSITE profilePS5088815.19998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1499166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALETLSSNE LLNFIIYDTI SATPYSSHDS LVTDFSLENG FSISQEQASS LNCFPLVTPQ  60
CRSTGVEAAD RRPNLAVQGR KKRRRKPRVC KNKEEAETQR MTHIAVERNR RKQMNEHLAV  120
LRSLMPESYV QRGDQASIVG GAIEFVKELE HLLQTLEAQK LQVLQQVRPA SEGTTNSKLL  180
PPPPPPPFAQ FFMFPQYTWS QIPSKFTSKT KASIADIEVT LIETHANLRI LSRKGPRHLS  240
KLVAGFQSLC LSILHLSVTT MYPLVLYSIS AKVEEGCQLS SVDDIAGAVH HMLRIIEEDE  300
TALC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985RKKRRRK
27986RKKRRRKP
38085KKRRRK
499110RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039472.20.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR03e-74BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A061G3I40.0A0A061G3I4_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY239730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.13e-68beta HLH protein 71
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]