PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015690t1
Common NameTCM_015690
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 371aa    MW: 40532.7 Da    PI: 8.5317
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015690t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.7e-1096120126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC+ f++ GtC+y  +C+FaH+
  Thecc1EG015690t1  96 FKTKLCCKFRA-GTCPYVTNCNFAHS 120
                       69*********.*************8 PP
2zf-CCCH18.53.5e-06170195126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C+ f+    C+yGd+C+F H+
  Thecc1EG015690t1 170 YKGRHCKKFYTEEGCPYGDNCTFLHD 195
                       78888********************7 PP
3zf-CCCH42.97.8e-14250275126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++G++C+FaHg
  Thecc1EG015690t1 250 WKTRICNKWELTGYCPFGNKCHFAHG 275
                       8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13195122IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-796120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-9167197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7168197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23169197IPR000571Zinc finger, CCCH-type
SMARTSM003560.058169196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16245279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-10247280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225249277IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9249276IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11250275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYHISFFPRK LQKENHFEEK ERTKHTEKRK DPSVWATEED YRVWNNQETS TDTPSNSSYD  60
QRQPQSRSNS EQPPNKKSRN SQELNSRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS  120
IEELRRPPPN WQEIVAAHEE EKGILSEPRE EFQIPSLGSS SFSGETQRSY KGRHCKKFYT  180
EEGCPYGDNC TFLHDEQSKN RESVAISLGP GGYGGGGGGA AAAGGGGGGG GGGGGAAAAG  240
NGSNSKPSNW KTRICNKWEL TGYCPFGNKC HFAHGVAELH RYGGGLVEAE AKDSSATPSD  300
PKQGGVPSKT PADTVAVSAP SVPLSDVYHL GVPSQRTSLV IQRPGQRAHQ KWKGPDKISR  360
IYGDWIDDIE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973938.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-126C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A061GA910.0A0A061GA91_THECC; Nucleic acid binding protein, putative
STRINGEOY239640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-129C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]