PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015685t1
Common NameTCM_015685
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 280aa    MW: 30902.5 Da    PI: 9.5081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015685t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-151460147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg+WT+ Ed ll +++k +G g+W++ + + g+ R++k+c++rw +y
  Thecc1EG015685t1 14 RGPWTATEDTLLTNYIKSHGEGHWRSLPIKAGLLRCGKSCRLRWMNY 60
                      89******************************99************9 PP
2Myb_DNA-binding55.21.6e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++l
  Thecc1EG015685t1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAKRLP-GRTDNEIKNYWNSHL 112
                       7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.535961IPR017930Myb domain
SuperFamilySSF466893.04E-2911108IPR009057Homeodomain-like
SMARTSM007178.2E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-121460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211568IPR009057Homeodomain-like
CDDcd001678.06E-91661No hitNo description
PROSITE profilePS5129427.4962116IPR017930Myb domain
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002493.3E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2669116IPR009057Homeodomain-like
CDDcd001676.40E-1471112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRAPCCTKV GLKRGPWTAT EDTLLTNYIK SHGEGHWRSL PIKAGLLRCG KSCRLRWMNY  60
IRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAKRLPGRT DNEIKNYWNS HLSKRVKKSE  120
TNSSNSKEAS RSSRKANKTS EKKQKSKEKQ EGANPTATTT VHQPKASRVS PFSLLTGSSG  180
FDSKISGPSS CGEGSRSGAN SDTDVFDFPP YWPDGNAGAA TNSGKAMVYD ENQQEFPYGF  240
DTGVGDGNML DDIFQEYQKL LVVDHDPGER NSFADSLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039451.20.0PREDICTED: transcription factor WER
TrEMBLA0A061G4310.0A0A061G431_THECC; R2r3-myb transcription factor, putative
STRINGEOY239520.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-66myb domain protein 111
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]