PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015683t1
Common NameTCM_015683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 281aa    MW: 30539.1 Da    PI: 8.7593
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015683t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-393797262
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s 
  Thecc1EG015683t1 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSA 97
                      7899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-303095IPR003851Zinc finger, Dof-type
PfamPF027011.4E-333995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1344195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDTAKWPQEI VVKPIEEIVT NTCPKPAALE RKARPQKEQA LNCPRCNSTN TKFCYYNNYS  60
LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSASSS SSSSSSSSKK LPDLVTPPSL  120
SQSSTQNPKI QDGQDLNLAF PASQGYRSMS ELVQVPNSVE NNKSQIPSSS SPTSQLSALE  180
LLTGISSRGL NSFLPMSVPD PNTVYTSGFP MQEFKPTLNF SLDGLGSGYG SLQGVQETTG  240
RLLFPFEDLK QVSSTTEIEQ NKEQGDSAGY WTGMLGGGSW *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973448.10.0PREDICTED: dof zinc finger protein DOF4.6
RefseqXP_017973449.10.0PREDICTED: dof zinc finger protein DOF4.6
RefseqXP_017973450.10.0PREDICTED: dof zinc finger protein DOF4.6
SwissprotQ8LAP83e-70DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A061G2Y50.0A0A061G2Y5_THECC; F-box family protein isoform 1
STRINGEOY239460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.18e-65Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]