PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015683t1 | ||||||||
Common Name | TCM_015683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 281aa MW: 30539.1 Da PI: 8.7593 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Thecc1EG015683t1 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSA 97 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 30 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDTAKWPQEI VVKPIEEIVT NTCPKPAALE RKARPQKEQA LNCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSASSS SSSSSSSSKK LPDLVTPPSL 120 SQSSTQNPKI QDGQDLNLAF PASQGYRSMS ELVQVPNSVE NNKSQIPSSS SPTSQLSALE 180 LLTGISSRGL NSFLPMSVPD PNTVYTSGFP MQEFKPTLNF SLDGLGSGYG SLQGVQETTG 240 RLLFPFEDLK QVSSTTEIEQ NKEQGDSAGY WTGMLGGGSW * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973448.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 | ||||
Refseq | XP_017973449.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 | ||||
Refseq | XP_017973450.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6 | ||||
Swissprot | Q8LAP8 | 3e-70 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A061G2Y5 | 0.0 | A0A061G2Y5_THECC; F-box family protein isoform 1 | ||||
STRING | EOY23946 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-65 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015683t1 |
Entrez Gene | 18606009 |
Publications ? help Back to Top | |||
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