PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015674t2
Common NameTCM_015674
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23837.1 Da    PI: 5.3761
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015674t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k ie+++nrqvtfsk r+g+lKKA+E+SvLCdae+ +iifsstg+l++y++
  Thecc1EG015674t2  9 KLIEDTTNRQVTFSKFRAGLLKKAHEVSVLCDAEIGLIIFSSTGELFDYCT 59
                      569**********************************************96 PP
2K-box393.3e-1477149981
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                       +++ +++ lq+ ++kL++e + L+ ++ hl G +L+sL++++L++LeqqLe s++k+R++K e   ++ +++q
  Thecc1EG015674t2  77 TQTPQQSGLQNMSEKLRRESHCLELSLNHLNGSELNSLKIEDLEELEQQLEYSINKVRARKIEEKQASSRQQQ 149
                       5667788899***************************************************886555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.903161IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-28278IPR002100Transcription factor, MADS-box
CDDcd002653.45E-39276No hitNo description
PRINTSPR004041.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1180167IPR002487Transcription factor, K-box
PROSITE profilePS5129710.50482167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRSKIEMKL IEDTTNRQVT FSKFRAGLLK KAHEVSVLCD AEIGLIIFSS TGELFDYCTQ  60
PLSMEQIIER YQLAKGTQTP QQSGLQNMSE KLRRESHCLE LSLNHLNGSE LNSLKIEDLE  120
ELEQQLEYSI NKVRARKIEE KQASSRQQQV PIEANMLEEK QQQVLNQFPF LGEEQPISVL  180
QLVSLPPSRP YLGQPMQSNL QEANTHHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19171169MEF2C
5f28_B6e-19171169MEF2C
5f28_C6e-19171169MEF2C
5f28_D6e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972721.11e-144PREDICTED: MADS-box protein defh21
SwissprotQ9ATE55e-50FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A061G2511e-149A0A061G251_THECC; K-box region and MADS-box transcription factor family protein isoform 2
STRINGEOY239341e-140(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]