PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015640t1
Common NameTCM_015640
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 474aa    MW: 53359.1 Da    PI: 6.4237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015640t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13300345454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Thecc1EG015640t1 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLSDAVAYIKEL 345
                       799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-5020202IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474599.16E-19294361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-14295350No hitNo description
PROSITE profilePS5088817.758296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17300357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-17302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSSSSSSSLI TFGQDASPTL QQRLQFIVQS RPEWWVYSIF WQASRDAHGH LVLSWGDGYF  60
RGTRNFSGES CNKLISQPKL VSNLERKRSN KEMQALFSEE MDLDRMVDVD VTDYEWYYTV  120
SITRSFAIGD GILGRAFGSG SYIWLSGDEE FQLYECERVR DARMRGFQTL VCLSTSFGVV  180
ELGSSEMIKE DWGMVQLAKS IFDSEINCLG SKQPSNESQF QISTKSVPFL DFGMVSGDQK  240
EWILEEKQQG EAKKETTGLG RSSSDSGPDS DGNFASADKE FNVRSKRGRK PGSGKDSPLN  300
HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLSDAVA YIKELRSKVE ELEAKLRVQS  360
QKSKLNAINV FDNQITTSTF ENTRPSPSYG PKTIEVDVKI VGSEAMIRVQ CPDVNYPAAR  420
LMDALRDLEL HVHHASISNV KELVLQDVVV RVPTGFISDE VLRTAILQRC RLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-32192038193Transcription factor MYC3
4rqw_B2e-32192038193Transcription factor MYC3
4rs9_A2e-32192038193Transcription factor MYC3
4yz6_A2e-32192038193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972360.10.0PREDICTED: transcription factor MYC3
TrEMBLA0A061G2060.0A0A061G206_THECC; Basic helix-loop-helix DNA-binding family protein, putative
STRINGEOY238850.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-64NACL-inducible gene 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]