PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015584t2 | ||||||||
Common Name | TCM_015584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 659aa MW: 72758.7 Da PI: 4.8955 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.6 | 2.8e-54 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p GfrF+Ptdeel+++yLk k++g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ Thecc1EG015584t2 13 PLGFRFRPTDEELINHYLKLKINGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTI 104 78************************999.99***************6447888888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s k++l+g+kktLvfykgrapkg++t+W+mheyr+ Thecc1EG015584t2 105 KS-KKSLIGMKKTLVFYKGRAPKGQRTNWIMHEYRA 139 **.899****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-61 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.046 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-28 | 13 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MITSCLPSDV SSPLGFRFRP TDEELINHYL KLKINGRHSE VEVIPEIDVC KWEPWDLPGL 60 SVIKSDDPEW FFFCPRDRKY PNGHRSNRAT DKGYWKATGK DRTIKSKKSL IGMKKTLVFY 120 KGRAPKGQRT NWIMHEYRAT AKDLDGTGPG QGAFVLCRLF HKLEERNDTV KYEEVEQTGY 180 SPTMTKSSPD DTSSDLLQDT VSSDTQAQKP DNVMQNGQVT GDSSCNSHMT SDAEDHATEE 240 TAVEKYPLLE GNSNLYEPNF GEIDYKVFSP MNLHFFEDLP VCMDSPYASD FGHDQNGFYF 300 QDGTGEQDVS FSMLDEVLNN HEGSCAASNS QKNLVAGTEM PLSGNGFISK TIPPETSYIE 360 ESGIYSETDT EMAQLQSESE VGAPRWFGGH VDNKYSVQMQ TSFDTGDTQR ALYDQAFRIG 420 NNGSLGNCSV GQATSYTDSA MGNINNLQQL TSLKNNMNNG GNLGGGTGMN TRTFEPPQQP 480 NSDNFATLGI GTGIKIRTRA PQQRANSDNF VNQGTAPRRI RLQMKTSNGP MKVSAGCVDD 540 GKMRSTGLGE EEEVQSALTE ITEAEAAGQI PSSDESEKEN QLLKFDGSGD IAEESCTKLR 600 QRVKQDGEPC SSQIGPSVHS KVAPAHHRSR SLSIVVFTVF LITILLALFI GIWRCLRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-46 | 8 | 165 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039299.2 | 0.0 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A061G2K5 | 0.0 | A0A061G2K5_THECC; NAC domain-containing protein 78, putative isoform 2 | ||||
STRING | EOY23801 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-139 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015584t2 |
Entrez Gene | 18605922 |
Publications ? help Back to Top | |||
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