PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015535t2 | ||||||||
Common Name | TCM_015535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 497aa MW: 54836.2 Da PI: 4.3529 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.3e-53 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrF+Ptdeel+++yL+ k++g+++++ vi+e+d++k+ePwdLp +++++++ ew+fF++ d+ky++g+r nrat++gyWkatgkd++ Thecc1EG015535t2 9 LPVGFRFRPTDEELIDFYLRSKINGNRTDEVGVIREIDVCKWEPWDLPdlSAIATRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRK 101 79*************************99999***************96447778889*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s +++l+g+kktLvfy+grap+g++t+Wvmheyr Thecc1EG015535t2 102 IKS-GSSLIGMKKTLVFYTGRAPRGKRTNWVMHEYRT 137 ***.99*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-60 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-28 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MAALSLNSLP VGFRFRPTDE ELIDFYLRSK INGNRTDEVG VIREIDVCKW EPWDLPDLSA 60 IATRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSSLIG MKKTLVFYTG 120 RAPRGKRTNW VMHEYRTTLD ELDGTKPGQN AFVICRLFKK DDETIEDING DEVDPALLTP 180 AEDMQSELVV PQDSPVVEGE AEKLPVSSET YPVGLPNEVI FNAVAPILEC NSIDYKAYGV 240 TGQVADIAPA EVDPIVEALS QFYDPMPDSL YCKLFSPLHS QIEAEQAPWM FNHVGNSFSG 300 VVIEHGTNEN DADISDFLND ILKNPDECCS DDSGSQKNST IESETPRAMA IGKDGSGSES 360 DAEVAQVLLG TETANRGGAP LEIKATAQDC TILNPKQDVN FSGTGPFFNV LNSNGELSNT 420 TCNVDNAITG IRIRSRTARS QPDTENSMTQ GNAPRRIRLQ CQFQVGPLYC GNAMNDWSSE 480 EKEDNSKPVF KEVRSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-43 | 8 | 163 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039233.2 | 0.0 | PREDICTED: NAC domain-containing protein 62 | ||||
TrEMBL | A0A061G1N1 | 0.0 | A0A061G1N1_THECC; NAC domain class transcription factor, putative isoform 2 | ||||
STRING | EOY23734 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 4e-99 | NAC domain containing protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015535t2 |
Entrez Gene | 18605880 |
Publications ? help Back to Top | |||
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