PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015456t2 | ||||||||
Common Name | TCM_015456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 230aa MW: 25139.1 Da PI: 9.8231 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6e-40 | 32 | 93 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Thecc1EG015456t2 32 NDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 93 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 28 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-34 | 33 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDTAQWPQQG IGVVKPMEAS RPMVERRARP QNDQALNCPR CNSTNTKFCY YNNYSLSQPR 60 YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR SSSSSSSSSP SIASSKKVGD LTPPGPASQN 120 PKIHEGQDLN LAYPPPTEDY NSFSKFVEVP YGTGSKSNHH NSSSSPTSTH LNATELLKTG 180 RGLSSFMSIP VSDSNTVYSS GFPIQDLKAT LINRTEAGVL FIAFLLAWW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007039117.2 | 1e-129 | PREDICTED: dof zinc finger protein DOF4.6 isoform X2 | ||||
Swissprot | Q8LAP8 | 5e-47 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A061G9A3 | 1e-169 | A0A061G9A3_THECC; F-box family protein, putative isoform 2 | ||||
STRING | EOY23618 | 1e-132 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-46 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015456t2 |
Entrez Gene | 18605810 |
Publications ? help Back to Top | |||
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