PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015456t1

Common Name

TCM_015456

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 274aa MW: 29617.7 Da PI: 8.6742

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015456t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.2e-40	31	92	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Thecc1EG015456t1 31 NDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 92 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	27	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-34	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDTAQWPQGI GVVKPMEASR PMVERRARPQ NDQALNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSSSSSSPS IASSKKVGDL TPPGPASQNP 120 KIHEGQDLNL AYPPPTEDYN SFSKFVEVPY GTGSKSNHHN SSSSPTSTHL NATELLKTGR 180 GLSSFMSIPV SDSNTVYSSG FPIQDLKATL NFSLDGFETS YGSLQGVQES GARLLFPMEE 240 LKQVPSTNEL EQSGGQGEST GYWSGMLGGG GHW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039117.2	1e-179	PREDICTED: dof zinc finger protein DOF4.6 isoform X2
Swissprot	Q8LAP8	9e-54	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A061G2L6	0.0	A0A061G2L6_THECC; F-box family protein, putative isoform 1
STRING	EOY23618	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-53	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015456t1
Entrez Gene	18605810

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]