PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015346t1
Common NameTCM_015346
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 362aa    MW: 40301.5 Da    PI: 5.2522
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015346t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.3e-30131192159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++eitY+g+H+++
  Thecc1EG015346t1 131 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFEITYRGRHTCT 192
                       59***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.835126194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-29127192IPR003657WRKY domain
SuperFamilySSF1182903.66E-26130193IPR003657WRKY domain
SMARTSM007746.5E-42131193IPR003657WRKY domain
PfamPF031062.5E-27132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENMGEWEQR SLINELTQGR ELARQLQVHL NVPSSHESRE SLVQKIQASY EKALSMLNYN  60
TSLAADQPQP SGLAIRMSES PPSRSGSPRS EDSDRDFKEQ ELKDASKKRK TLPRWTQLVR  120
VTPGTALEGP LDDGFSWRKY GQKDILGAKY PRGYYRCTHR NVQGCLATKQ VQRSDDDPTI  180
FEITYRGRHT CTVASHVMPP SGPSESQEQG TCMEPQQPEQ NQNQSQDLLL NFQRGLKVIT  240
EDLDIREQTY PSFPYPSSTT SNIKLENNVF SPSVIDNNVV GNLSPSFISP ATSGTNYFSM  300
SPSPSGMNNT VQGNISFPST SEPQLSTEII QAATSATNSP FPFGNPEFDP NFTFDNHGFF  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21131191868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109LKDASKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972430.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ8H0Y83e-59WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A061G2L80.0A0A061G2L8_THECC; WRKY DNA-binding protein 30, putative
STRINGEOY234570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-54WRKY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]