PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015336t1
Common NameTCM_015336
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 362aa    MW: 40095.3 Da    PI: 4.5027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015336t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19130179255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Thecc1EG015336t1 130 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 179
                       89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29129187IPR001471AP2/ERF domain
PROSITE profilePS5103223.63130187IPR001471AP2/ERF domain
CDDcd000183.40E-33130186No hitNo description
PfamPF008479.6E-13130179IPR001471AP2/ERF domain
SMARTSM003803.2E-38130193IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21130187IPR016177DNA-binding domain
PRINTSPR003674.0E-10131142IPR001471AP2/ERF domain
PRINTSPR003674.0E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDQSILCPIK YTEHKNVTKI FRKPSLKPKK TSSDHDRTHN NNTPDVPRIV RVSVTDPDAT  60
DSSSDEEADF FGRQRVKRYV NEINIEATCK NTATTTISNT NRKRTAAAAD VTTACRRPLK  120
LSSSNGNGRK FRGVRQRPWG KWAAEIRDPA RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP  180
DALTNFVTPP AKENKEKPEI INVASVSGYE SGDESSHNLS SPTSVLNFRT QSSEETAVEP  240
EKPVQELQEE ESKPPPVQEQ VVPSECQGET GTNLPDDSGD YLPLDFPFLD EFFNIPVPGL  300
SLFDDTATIL PESSVFSEDF SNMLLDTPQD FGCSSSSSIS QVDDYFEDIG DLFFSDPLVA  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21128186362ATERF1
3gcc_A1e-21128186362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972249.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A061G2190.0A0A061G219_THECC; Ethylene-responsive transcription factor, putative
STRINGEOY234430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-60cytokinin response factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]