PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015200t1 | ||||||||
Common Name | TCM_015200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 698aa MW: 77655.1 Da PI: 8.7493 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 77 | 98 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Thecc1EG015200t1 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0098 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MSVGKLKAAS AADLMKSEEP NDSLDTFIRQ AIGKEPFLSL SKPGDTPVQW IQLLHALDQQ 60 DLPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRGLLAAFWD 120 KLSEDEAKEV ISFKDVSLEE VPGPSVIKSL TTLVKRPGFS ALPQVCLRAG SALLDIVQTR 180 PSRFPISSQE LFSILDDASE KTFLCGAAVS MQKYIFDGEA GKIGLETKNL VSSTSFLVEQ 240 KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERRK QKKLRQKEQK AKDQRHGEME 300 VVKQDMDDSL GVNIPAETSS SLAACDFDRQ NPVTLTDQVL LSMERIYFSN PQEDVDYKMQ 360 MGFSNGYCDP GTSQNIERRM EQAGGHRHIV VARWKTPPKS QRGVPTGLHA SQNSIGFKFG 420 GINKHGTNRE RVAAMGNGNK MWSRKPKAVN DGESLKSRAE KQAANQLDQN QLDQNKNHEV 480 LIGSISVTLG NCSHHEGNNL TEAHDRCLAD YQIPKKNNVH EKSSKLDPVQ GVTNRSTIKF 540 WRPVSRHESK SSLQVQNGIR EFEVEVIAEK DGDQTSSNES CLRSWVTDSS NGVVSMNTST 600 LEESLQPGSL QFDSHAAKVF LAGRWKEAFA GEHLTLVLSP NLELPGCSVV EIDSSEKWMV 660 RAGPFEASTG GAAKGKFRTK PEKGAKIRYI PKQRSAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 283 | ERRKQKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972912.1 | 0.0 | PREDICTED: uncharacterized protein LOC18605590 | ||||
Refseq | XP_017972913.1 | 0.0 | PREDICTED: uncharacterized protein LOC18605590 | ||||
TrEMBL | A0A061G098 | 0.0 | A0A061G098_THECC; C2H2-like zinc finger protein, putative | ||||
STRING | EOY23235 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5680 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-159 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015200t1 |
Entrez Gene | 18605590 |
Publications ? help Back to Top | |||
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