PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015200t1
Common NameTCM_015200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 698aa    MW: 77655.1 Da    PI: 8.7493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015200t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-057798223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      kC +C++ F ++ n++rHir+H
  Thecc1EG015200t1 77 KCDKCSREFCSPINYRRHIRVH 98
                      7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11876103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MSVGKLKAAS AADLMKSEEP NDSLDTFIRQ AIGKEPFLSL SKPGDTPVQW IQLLHALDQQ  60
DLPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRGLLAAFWD  120
KLSEDEAKEV ISFKDVSLEE VPGPSVIKSL TTLVKRPGFS ALPQVCLRAG SALLDIVQTR  180
PSRFPISSQE LFSILDDASE KTFLCGAAVS MQKYIFDGEA GKIGLETKNL VSSTSFLVEQ  240
KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERRK QKKLRQKEQK AKDQRHGEME  300
VVKQDMDDSL GVNIPAETSS SLAACDFDRQ NPVTLTDQVL LSMERIYFSN PQEDVDYKMQ  360
MGFSNGYCDP GTSQNIERRM EQAGGHRHIV VARWKTPPKS QRGVPTGLHA SQNSIGFKFG  420
GINKHGTNRE RVAAMGNGNK MWSRKPKAVN DGESLKSRAE KQAANQLDQN QLDQNKNHEV  480
LIGSISVTLG NCSHHEGNNL TEAHDRCLAD YQIPKKNNVH EKSSKLDPVQ GVTNRSTIKF  540
WRPVSRHESK SSLQVQNGIR EFEVEVIAEK DGDQTSSNES CLRSWVTDSS NGVVSMNTST  600
LEESLQPGSL QFDSHAAKVF LAGRWKEAFA GEHLTLVLSP NLELPGCSVV EIDSSEKWMV  660
RAGPFEASTG GAAKGKFRTK PEKGAKIRYI PKQRSAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERRKQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972912.10.0PREDICTED: uncharacterized protein LOC18605590
RefseqXP_017972913.10.0PREDICTED: uncharacterized protein LOC18605590
TrEMBLA0A061G0980.0A0A061G098_THECC; C2H2-like zinc finger protein, putative
STRINGEOY232350.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-159C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]