PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015159t1 | ||||||||
Common Name | TCM_015159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28275.1 Da PI: 8.432 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv+++k++G ++W+t + g++R++k+c++rw +yl Thecc1EG015159t1 14 KGAWTPEEDKLLVHYIKKHGHDCWRTLPMLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ +++++ +lG++ W++Ia++++ gRt++++k++w+++l Thecc1EG015159t1 67 RGPFSSEEEACIIRLHGMLGNR-WAAIASHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.137 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.59E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.977 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.42E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRTPSCDKE GMKKGAWTPE EDKLLVHYIK KHGHDCWRTL PMLAGLRRCG KSCRLRWTNY 60 LRPDIKRGPF SSEEEACIIR LHGMLGNRWA AIASHLPGRT DNEIKNFWNT HLKKRLLSTG 120 NILQTSLSPS DCEPSTLKSE LPSTRHTVQC ESFRLEGEAR LSIESSMLRS SSTSKTDCDI 180 FLKLWNSDVG EKFRNIAKLP KKEEASETPM SQTSSWTKLE SSSCITCEER SSISCGSDTT 240 PEQTDCYRPG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090267.1 | 1e-101 | transcription factor MYB6 | ||||
Refseq | XP_021671666.1 | 1e-101 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 3e-90 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A061G056 | 0.0 | A0A061G056_THECC; Myb domain protein 17, putative | ||||
STRING | EOY23175 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 9e-89 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015159t1 |
Entrez Gene | 18605554 |
Publications ? help Back to Top | |||
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