PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015159t1
Common NameTCM_015159
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 251aa    MW: 28275.1 Da    PI: 8.432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015159t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+llv+++k++G ++W+t +   g++R++k+c++rw +yl
  Thecc1EG015159t1 14 KGAWTPEEDKLLVHYIKKHGHDCWRTLPMLAGLRRCGKSCRLRWTNYL 61
                      79********************************************97 PP

2Myb_DNA-binding521.6e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
  Thecc1EG015159t1  67 RGPFSSEEEACIIRLHGMLGNR-WAAIASHLP-GRTDNEIKNFWNTHL 112
                       89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-24664IPR009057Homeodomain-like
PROSITE profilePS5129417.137961IPR017930Myb domain
SuperFamilySSF466896.97E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001677.59E-111661No hitNo description
PROSITE profilePS5129425.97762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
CDDcd001678.42E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRTPSCDKE GMKKGAWTPE EDKLLVHYIK KHGHDCWRTL PMLAGLRRCG KSCRLRWTNY  60
LRPDIKRGPF SSEEEACIIR LHGMLGNRWA AIASHLPGRT DNEIKNFWNT HLKKRLLSTG  120
NILQTSLSPS DCEPSTLKSE LPSTRHTVQC ESFRLEGEAR LSIESSMLRS SSTSKTDCDI  180
FLKLWNSDVG EKFRNIAKLP KKEEASETPM SQTSSWTKLE SSSCITCEER SSISCGSDTT  240
PEQTDCYRPG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090267.11e-101transcription factor MYB6
RefseqXP_021671666.11e-101transcription factor MYB41-like
SwissprotQ9M2D93e-90MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A061G0560.0A0A061G056_THECC; Myb domain protein 17, putative
STRINGEOY231750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.19e-89myb domain protein 17
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]