PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015157t1
Common NameTCM_015157
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 296aa    MW: 33222 Da    PI: 6.7398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015157t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  Thecc1EG015157t1 15 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding56.18.4e-1868113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +T++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Thecc1EG015157t1  68 RGMFTPQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                       789*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-221065IPR009057Homeodomain-like
PROSITE profilePS5129417.1951062IPR017930Myb domain
SuperFamilySSF466891.21E-2913109IPR009057Homeodomain-like
SMARTSM007172.7E-111464IPR001005SANT/Myb domain
PfamPF002492.2E-141562IPR001005SANT/Myb domain
CDDcd001672.36E-101862No hitNo description
PROSITE profilePS5129426.24963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2666117IPR009057Homeodomain-like
SMARTSM007172.0E-1567115IPR001005SANT/Myb domain
PfamPF002496.9E-1768113IPR001005SANT/Myb domain
CDDcd001672.54E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGCKPSDKPK AKHRKGLWSP EEDLKLRNYV LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTPQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKV  120
EESEAKTRTH NTTSSSENTE STLSPQTVIG QMPSYDSLQH IEKSSIDIDQ AFPQHFDFPR  180
EPQRSFLPKL LFAEWLSLDQ EGGSFANSGK PVTSSDGFNQ GSSSNFQDPF INGYSLNEGV  240
FGSDLHDGLS NSSINEIFGS QFKFEAQISG NEFVGSVSGE DICSDFNINN DVMYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346602e-38KM034660.1 Jatropha curcas clone JcMYB040 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038672.20.0PREDICTED: transcription factor LAF1
TrEMBLA0A061G1E10.0A0A061G1E1_THECC; Myb domain protein 18, putative
STRINGEOY231730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.13e-58myb domain protein 45
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]