PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015114t2

Common Name

TCM_015114

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 748aa MW: 82174.7 Da PI: 6.1082

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015114t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	2e-20	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l L+ +q+k+WFqNrR+++k Thecc1EG015114t2 54 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQNRRTQMK 109 79999************************************************999 PP
2	START	173.5	1.3e-54	255	477	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 +a++a++el+k+++ ++p+W k e +n +e++++f++ + + +ea r++g+v+ lve+l+d + +W e+++ +++t Thecc1EG015114t2 255 IALAAMDELIKMVQMDSPLWIKGLdggmETLNHEEYRRTFSSCIGmkpsgYATEATRETGLVFLRGLALVETLMDAN-RWAEMFPcmisRVAT 346 6899**********************************98888****************************.*********** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++v+ss+ ++lq+m ae+q+lsplvp R + f+R+++q+++ +w++vdvS+d q+ + + + +++lpSg++i++++n +skvtwv Thecc1EG015114t2 347 IDVLSSAtgvtrdNTLQVMDAEFQVLSPLVPvRQVRFLRFCKQHTERVWAVVDVSIDASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWV 439 **********************************************************9888899******************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 eh +++++ +h llr+l+++g +ga +w+atlqrqc Thecc1EG015114t2 440 EHSEYDDSAVHHLLRPLLSYGFGFGAHRWLATLQRQCD 477 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-21	40	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-20	40	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	51	111	IPR001356	Homeobox domain
SMART	SM00389	6.2E-17	53	115	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-18	54	109	IPR001356	Homeobox domain
CDD	cd00086	2.16E-18	54	111	No hit	No description
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.517	245	481	IPR002913	START domain
SuperFamily	SSF55961	8.65E-30	246	478	No hit	No description
CDD	cd08875	1.76E-110	249	476	No hit	No description
SMART	SM00234	1.2E-34	254	478	IPR002913	START domain
Pfam	PF01852	2.1E-46	255	477	IPR002913	START domain
SuperFamily	SSF55961	3.3E-18	506	741	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MDAHGEMGLI GENFDPGLVG RMKEDGYESR SGSDNFEGAS GDDQDAADDG RPKKKKYHRH 60 TPHQIQELES FFKECPHPDE KQRLELSRRL ALESKQIKFW FQNRRTQMKT QLERHENVIL 120 RQENDKLRAE NDLLKQAMSS PTCNSCGGPA VPGEISYEQH QLRIENARLK DELNRICALT 180 NKFLGRPLSS SASPIPSQGL NSNLELAVGR NDFGGLNNAG TTLPMGFDFV DGAMMPLMKT 240 MANEMPYDRS ALVDIALAAM DELIKMVQMD SPLWIKGLDG GMETLNHEEY RRTFSSCIGM 300 KPSGYATEAT RETGLVFLRG LALVETLMDA NRWAEMFPCM ISRVATIDVL SSATGVTRDN 360 TLQVMDAEFQ VLSPLVPVRQ VRFLRFCKQH TERVWAVVDV SIDASQDAAS AQMFPNCRRL 420 PSGCVIQDMD NKYSKVTWVE HSEYDDSAVH HLLRPLLSYG FGFGAHRWLA TLQRQCDCLA 480 VLMSPNIPGE ENTGITPAGR KNMLKLAQRM TYNFCAGVCA SSVHKWDKLS VGNVGEDVRV 540 MTRKNIDDPG EPAGVVLSAA TSVWMPITQQ RLFDFLRDER MRSQWDILSN GGPMQGMVKI 600 AKGPGHGNCV SLLRGSAINA NENNMLILQE TWSDASGALV VYAPVDISSI GVVMNGGDSA 660 YVALLPSGFA ILPGISPSYH GGQSNSNGPM VKPDIDGSIS GGCLLTVGFQ ILVNSLPTAK 720 LTVESVETVN NLISCTIQKI KAALTVT*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MDAHGEMGLI GENFDPGLVG RMKEDGYESR SGSDNFEGAS GDDQDAADDG RPKKKKYHRH  60
TPHQIQELES FFKECPHPDE KQRLELSRRL ALESKQIKFW FQNRRTQMKT QLERHENVIL  120
RQENDKLRAE NDLLKQAMSS PTCNSCGGPA VPGEISYEQH QLRIENARLK DELNRICALT  180
NKFLGRPLSS SASPIPSQGL NSNLELAVGR NDFGGLNNAG TTLPMGFDFV DGAMMPLMKT  240
MANEMPYDRS ALVDIALAAM DELIKMVQMD SPLWIKGLDG GMETLNHEEY RRTFSSCIGM  300
KPSGYATEAT RETGLVFLRG LALVETLMDA NRWAEMFPCM ISRVATIDVL SSATGVTRDN  360
TLQVMDAEFQ VLSPLVPVRQ VRFLRFCKQH TERVWAVVDV SIDASQDAAS AQMFPNCRRL  420
PSGCVIQDMD NKYSKVTWVE HSEYDDSAVH HLLRPLLSYG FGFGAHRWLA TLQRQCDCLA  480
VLMSPNIPGE ENTGITPAGR KNMLKLAQRM TYNFCAGVCA SSVHKWDKLS VGNVGEDVRV  540
MTRKNIDDPG EPAGVVLSAA TSVWMPITQQ RLFDFLRDER MRSQWDILSN GGPMQGMVKI  600
AKGPGHGNCV SLLRGSAINA NENNMLILQE TWSDASGALV VYAPVDISSI GVVMNGGDSA  660
YVALLPSGFA ILPGISPSYH GGQSNSNGPM VKPDIDGSIS GGCLLTVGFQ ILVNSLPTAK  720
LTVESVETVN NLISCTIQKI KAALTVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972895.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A061G1P9	0.0	A0A061G1P9_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1
STRING	EOY23122	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015114t2
Entrez Gene	18605518

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]