PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015114t1

Common Name

TCM_015114

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 795aa MW: 87174.6 Da PI: 6.372

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015114t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.2e-20	101	156	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l L+ +q+k+WFqNrR+++k Thecc1EG015114t1 101 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQNRRTQMK 156 79999************************************************999 PP
2	START	173.3	1.5e-54	302	524	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 +a++a++el+k+++ ++p+W k e +n +e++++f++ + + +ea r++g+v+ lve+l+d + +W e+++ +++t Thecc1EG015114t1 302 IALAAMDELIKMVQMDSPLWIKGLdggmETLNHEEYRRTFSSCIGmkpsgYATEATRETGLVFLRGLALVETLMDAN-RWAEMFPcmisRVAT 393 6899**********************************98888****************************.*********** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++v+ss+ ++lq+m ae+q+lsplvp R + f+R+++q+++ +w++vdvS+d q+ + + + +++lpSg++i++++n +skvtwv Thecc1EG015114t1 394 IDVLSSAtgvtrdNTLQVMDAEFQVLSPLVPvRQVRFLRFCKQHTERVWAVVDVSIDASQDAASAQMFPNCRRLPSGCVIQDMDNKYSKVTWV 486 **********************************************************9888899******************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 eh +++++ +h llr+l+++g +ga +w+atlqrqc Thecc1EG015114t1 487 EHSEYDDSAVHHLLRPLLSYGFGFGAHRWLATLQRQCD 524 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-20	87	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-21	87	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	98	158	IPR001356	Homeobox domain
SMART	SM00389	6.2E-17	100	162	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-18	101	156	IPR001356	Homeobox domain
CDD	cd00086	2.42E-18	101	158	No hit	No description
PROSITE pattern	PS00027	0	133	156	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.517	292	528	IPR002913	START domain
SuperFamily	SSF55961	9.75E-30	293	525	No hit	No description
CDD	cd08875	9.99E-110	296	523	No hit	No description
SMART	SM00234	1.2E-34	301	525	IPR002913	START domain
Pfam	PF01852	2.3E-46	302	524	IPR002913	START domain
SuperFamily	SSF55961	3.71E-18	553	788	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MGARIVVADI VPPSNMLSGA IVEPPLLTQH IPKSMQSSPS LSLSYKRMDA HGEMGLIGEN 60 FDPGLVGRMK EDGYESRSGS DNFEGASGDD QDAADDGRPK KKKYHRHTPH QIQELESFFK 120 ECPHPDEKQR LELSRRLALE SKQIKFWFQN RRTQMKTQLE RHENVILRQE NDKLRAENDL 180 LKQAMSSPTC NSCGGPAVPG EISYEQHQLR IENARLKDEL NRICALTNKF LGRPLSSSAS 240 PIPSQGLNSN LELAVGRNDF GGLNNAGTTL PMGFDFVDGA MMPLMKTMAN EMPYDRSALV 300 DIALAAMDEL IKMVQMDSPL WIKGLDGGME TLNHEEYRRT FSSCIGMKPS GYATEATRET 360 GLVFLRGLAL VETLMDANRW AEMFPCMISR VATIDVLSSA TGVTRDNTLQ VMDAEFQVLS 420 PLVPVRQVRF LRFCKQHTER VWAVVDVSID ASQDAASAQM FPNCRRLPSG CVIQDMDNKY 480 SKVTWVEHSE YDDSAVHHLL RPLLSYGFGF GAHRWLATLQ RQCDCLAVLM SPNIPGEENT 540 GITPAGRKNM LKLAQRMTYN FCAGVCASSV HKWDKLSVGN VGEDVRVMTR KNIDDPGEPA 600 GVVLSAATSV WMPITQQRLF DFLRDERMRS QWDILSNGGP MQGMVKIAKG PGHGNCVSLL 660 RGSAINANEN NMLILQETWS DASGALVVYA PVDISSIGVV MNGGDSAYVA LLPSGFAILP 720 GISPSYHGGQ SNSNGPMVKP DIDGSISGGC LLTVGFQILV NSLPTAKLTV ESVETVNNLI 780 SCTIQKIKAA LTVT*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MGARIVVADI VPPSNMLSGA IVEPPLLTQH IPKSMQSSPS LSLSYKRMDA HGEMGLIGEN  60
FDPGLVGRMK EDGYESRSGS DNFEGASGDD QDAADDGRPK KKKYHRHTPH QIQELESFFK  120
ECPHPDEKQR LELSRRLALE SKQIKFWFQN RRTQMKTQLE RHENVILRQE NDKLRAENDL  180
LKQAMSSPTC NSCGGPAVPG EISYEQHQLR IENARLKDEL NRICALTNKF LGRPLSSSAS  240
PIPSQGLNSN LELAVGRNDF GGLNNAGTTL PMGFDFVDGA MMPLMKTMAN EMPYDRSALV  300
DIALAAMDEL IKMVQMDSPL WIKGLDGGME TLNHEEYRRT FSSCIGMKPS GYATEATRET  360
GLVFLRGLAL VETLMDANRW AEMFPCMISR VATIDVLSSA TGVTRDNTLQ VMDAEFQVLS  420
PLVPVRQVRF LRFCKQHTER VWAVVDVSID ASQDAASAQM FPNCRRLPSG CVIQDMDNKY  480
SKVTWVEHSE YDDSAVHHLL RPLLSYGFGF GAHRWLATLQ RQCDCLAVLM SPNIPGEENT  540
GITPAGRKNM LKLAQRMTYN FCAGVCASSV HKWDKLSVGN VGEDVRVMTR KNIDDPGEPA  600
GVVLSAATSV WMPITQQRLF DFLRDERMRS QWDILSNGGP MQGMVKIAKG PGHGNCVSLL  660
RGSAINANEN NMLILQETWS DASGALVVYA PVDISSIGVV MNGGDSAYVA LLPSGFAILP  720
GISPSYHGGQ SNSNGPMVKP DIDGSISGGC LLTVGFQILV NSLPTAKLTV ESVETVNNLI  780
SCTIQKIKAA LTVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972893.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_017972894.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A061G1P9	0.0	A0A061G1P9_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1
STRING	EOY23122	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015114t1
Entrez Gene	18605518

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]