PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015107t3

Common Name

TCM_015107

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 982aa MW: 112266 Da PI: 6.5988

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015107t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83	4.9e-26	210	296	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ +GFsvrk+ ++sk +g++++r+f+Cskeg+r++++++ ++ +++r+etrtgC a++ ++++ +gk++v+++e +HnH+ Thecc1EG015107t3 210 RFYNKYARLLGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRKDQRD-VNVKKHRKETRTGCLAHMIITRQPNGKYRVSHFEANHNHD 296 5******************************************99.999**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47699	5.63E-11	18	100	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Pfam	PF14368	5.1E-5	19	81	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDD	cd04660	6.73E-12	37	96	No hit	No description
SMART	SM00499	2.7E-7	37	97	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Pfam	PF03101	7.0E-24	210	296	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-25	419	513	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	699	735	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	710	737	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.1E-4	712	735	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MAILRSLLCL ISWQATALLL LLAVAAVQSQ TAKAQSCPNE LNRLNVCAPF VVPGVPEATP 60 SSDCCAALQS VQHDCLCNTL RIASRLPSRC NIPALSCVPF FFSQRDRSRI SYPGSLLKSD 120 ISSVENDDSL VTPRSMNRDA DDLGNLHDED ADNRAQTSDK LDLNVEHNCR SPKVNPVHTT 180 QSSLPSKGET NADGVLKIGI EFDSDEHAYR FYNKYARLLG FSVRKDWVNR SKIHGQVVSR 240 KFTCSKEGYR RKDQRDVNVK KHRKETRTGC LAHMIITRQP NGKYRVSHFE ANHNHDNINP 300 NNEQTLQLQK ELCFAQASET DKPNNSETQN AAFDLMRRRF LVRESLDCLA EDYDNHLRSE 360 RVRDMKEGEA GHLLRYFLRQ HFENPSVFYA IQLDIDDKVS NIFWADDNMV VDYNYFGDVV 420 CLDTSCRTNK DLKPFVQFIG VNHHNQVVIF AAALLYDDTV ESLKWLFHTF LEAMSGKKPK 480 VILTDQDATV VEAISSVLPE TSHHICVWQM HRNALKHLSY VQKDAEAFAN DFRSCIYDHK 540 DENDFIHAWE AMLEIYNLKQ NEWLKWMYRE REKWAVVYDR NTFFIDMKCS HLGESLSNKL 600 RRHLNSDQDV LQFFKHFERV VDEQRYKEIE ASDEMSHCKP KLMGNVILLK HASEIYTPKA 660 FEVFQCEYEK CLNVVANQCS QNGYLSEYKV NTFGQSQEYT VTFDSSDDTV ICSCMKFEYV 720 GFLCSHALRV LDHRNIKVVP SRYILRRWTK DARIGCARED SDFIIQENPK LVAARRYRDM 780 CRCILNISAR AAESDDAFHF ASRQLNEIIV GLEKILTLKA EEAQVIASSS SGASASDSEN 840 AEIFLDGHAI EDQDESSRVQ SKKENEAVVP HRQKQKNVPE RGSKTKGVQN KRSNSPNTIT 900 SISSPSPTYV SPQASGPAPV MQGLFNFEAN QVVQCIYQQP NMVMEQEPNA EMYQQPNFYT 960 DQHDSPSQTQ LLQVIFVCST F*

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MAILRSLLCL ISWQATALLL LLAVAAVQSQ TAKAQSCPNE LNRLNVCAPF VVPGVPEATP  60
SSDCCAALQS VQHDCLCNTL RIASRLPSRC NIPALSCVPF FFSQRDRSRI SYPGSLLKSD  120
ISSVENDDSL VTPRSMNRDA DDLGNLHDED ADNRAQTSDK LDLNVEHNCR SPKVNPVHTT  180
QSSLPSKGET NADGVLKIGI EFDSDEHAYR FYNKYARLLG FSVRKDWVNR SKIHGQVVSR  240
KFTCSKEGYR RKDQRDVNVK KHRKETRTGC LAHMIITRQP NGKYRVSHFE ANHNHDNINP  300
NNEQTLQLQK ELCFAQASET DKPNNSETQN AAFDLMRRRF LVRESLDCLA EDYDNHLRSE  360
RVRDMKEGEA GHLLRYFLRQ HFENPSVFYA IQLDIDDKVS NIFWADDNMV VDYNYFGDVV  420
CLDTSCRTNK DLKPFVQFIG VNHHNQVVIF AAALLYDDTV ESLKWLFHTF LEAMSGKKPK  480
VILTDQDATV VEAISSVLPE TSHHICVWQM HRNALKHLSY VQKDAEAFAN DFRSCIYDHK  540
DENDFIHAWE AMLEIYNLKQ NEWLKWMYRE REKWAVVYDR NTFFIDMKCS HLGESLSNKL  600
RRHLNSDQDV LQFFKHFERV VDEQRYKEIE ASDEMSHCKP KLMGNVILLK HASEIYTPKA  660
FEVFQCEYEK CLNVVANQCS QNGYLSEYKV NTFGQSQEYT VTFDSSDDTV ICSCMKFEYV  720
GFLCSHALRV LDHRNIKVVP SRYILRRWTK DARIGCARED SDFIIQENPK LVAARRYRDM  780
CRCILNISAR AAESDDAFHF ASRQLNEIIV GLEKILTLKA EEAQVIASSS SGASASDSEN  840
AEIFLDGHAI EDQDESSRVQ SKKENEAVVP HRQKQKNVPE RGSKTKGVQN KRSNSPNTIT  900
SISSPSPTYV SPQASGPAPV MQGLFNFEAN QVVQCIYQQP NMVMEQEPNA EMYQQPNFYT  960
DQHDSPSQTQ LLQVIFVCST F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021284700.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A061G7U4	0.0	A0A061G7U4_THECC; FAR1-related sequence 5 isoform 3
STRING	EOY23112	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG015107t3
Entrez Gene	18605511

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]