PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015033t1

Common Name

TCM_015033

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 276aa MW: 30729.2 Da PI: 8.2115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015033t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.3e-13	74	124	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ s ++ Lr+llP ++K s ++ +Av+YIk+L+ Thecc1EG015033t1 74 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 124 67***********************77...******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.09E-12	71	128	No hit	No description
PROSITE profile	PS50888	14.418	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-14	72	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-11	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-11	75	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-6	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MFPLQQGDDL VYQIFFNSNQ HKIPQDLITD HASLEGTPIP IIGSSMGKSQ RRKVCHMEST 60 STQAFTCDKY KKQKLHREIE RQRRQDMASL YASLRSLLPG EYIKGKRSMS DHMNEAVNYI 120 KHLEKKVKDL DVKRDELKRV SNLAALGSGT ESSNHCFIIR PCLIGIEIMF RCGFEEQGLP 180 LSRVLAALVD EGLPVVSCIS TKSEEYLLHT IQTEVNDPTS FNLSGLQQKL AKNCVASSCS 240 PNETARVGCR QITWTVAICI STSTLGNDGQ SCKNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	73	RRKVCHMESTSTQAFTCDKYKKQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973035.1	0.0	PREDICTED: transcription factor bHLH118
TrEMBL	A0A061FZP8	0.0	A0A061FZP8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY23020	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	5e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015033t1
Entrez Gene	18605451

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]