PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014903t1

Common Name

TCM_014903

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 313aa MW: 34248.1 Da PI: 5.4623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014903t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	7	28	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F + + H+r+H Thecc1EG014903t1 7 TCKICNRRFASGKAMGGHMRSH 28 6*******************99 PP
2	zf-C2H2	14.2	0.00012	199	221	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F+++ L H +H Thecc1EG014903t1 199 YKCETCNRVFKSHQALGGHRASH 221 9***************9999888 PP
3	zf-C2H2	11.4	0.001	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H ++H Thecc1EG014903t1 257 FECPFCDKVFQSGQALGGHKKSH 279 89********9999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.1E-5	3	33	No hit	No description
SMART	SM00355	0.17	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	6	33	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-9	8	30	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.679	199	226	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	199	221	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.7E-8	199	222	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.99E-9	199	221	No hit	No description
PROSITE pattern	PS00028	0	201	221	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.99E-9	252	279	No hit	No description
SMART	SM00355	0.014	257	279	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.889	257	279	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-11	257	279	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	259	279	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEKKSKTCKI CNRRFASGKA MGGHMRSHLA KLPIPPKLSL PSSSSTPAPN NNKSPPPSSS 60 ALSRDPSSEV NHMQPYRSEL SSETESPRNP TGRRSKRLRK VALNMVGSPS DSVSSIVIPV 120 IPAETETLSS EDAAMCLLML SKDKWTTIKK EQKEVYYESI DDEEEFDGDG DDDVDENENN 180 DDDDLFCVTN PGAQAHPKYK CETCNRVFKS HQALGGHRAS HKNKQVIRAS IEEGEEAEGE 240 KCGGAGGGDQ IEQQRIFECP FCDKVFQSGQ ALGGHKKSHF TYLAVADKVP EKSSAVQLFD 300 LNLPAPEYDD ES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038350.2	0.0	PREDICTED: zinc finger protein ZAT9
TrEMBL	A0A061G000	0.0	A0A061G000_THECC; C2H2 zinc finger protein, putative
STRING	EOY22851	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	9e-28	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG014903t1
Entrez Gene	18605337

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]