PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014872t1
Common NameTCM_014872
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 314aa    MW: 35711.5 Da    PI: 7.0361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014872t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151257146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                      +g+WT+eEde l+++vk++G++ W++I r mg + Rt+k+c++rw +
  Thecc1EG014872t1 12 KGPWTAEEDEVLLNYVKKYGPRGWSSI-RSMGlLPRTGKSCRLRWVN 57
                      79************************9.6777788**********87 PP
2Myb_DNA-binding45.41.8e-1468107344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                       ++++eE+   +++ +q+G++ W++Iar+++ gRt++++k++w
  Thecc1EG014872t1  68 KFSAEEERVVIELQAQFGNK-WAKIARYLP-GRTDNDVKNFW 107
                       79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.322159IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20860IPR009057Homeodomain-like
SuperFamilySSF466897.91E-3010107IPR009057Homeodomain-like
SMARTSM007171.2E-121161IPR001005SANT/Myb domain
PfamPF002491.2E-121257IPR001005SANT/Myb domain
CDDcd001673.34E-121459No hitNo description
PROSITE profilePS5129420.88860115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-1861113IPR009057Homeodomain-like
SMARTSM007173.3E-1265113IPR001005SANT/Myb domain
PfamPF002492.8E-1268107IPR001005SANT/Myb domain
CDDcd001672.93E-1168107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MERQSEGTCI KKGPWTAEED EVLLNYVKKY GPRGWSSIRS MGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS AEEERVVIEL QAQFGNKWAK IARYLPGRTD NDVKNFWSAR RKRLERILLT  120
PTSNSHKNKG KDPVLHEMPM VEVPPSNFIP LEQGSSSHHD QAKRPSFSGN FEEFRMVPLP  180
DLVQPDLPNL ETGLPILDIA TIQMIPSIEP SANYPVSLQP QLQLDLPSLT QCQDLAPEPN  240
GLNFEGMFKH QEASESDSKP KWFTRFPSTG MNNNAQIGKK EDRRNPAIPD SFFDEFPSDM  300
FDYLDPLPNS SEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038312.10.0PREDICTED: myb-related protein 305
TrEMBLA0A061G0B10.0A0A061G0B1_THECC; Myb-like HTH transcriptional regulator family protein, putative
STRINGEOY228130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2229145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.18e-64MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]