PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014847t2 | ||||||||
Common Name | TCM_014847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31992.1 Da PI: 9.8132 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g Thecc1EG014847t2 103 HYRGVRRRP-WGKFAAEIRDP---NrKGARVWLGTFDTAIEAAKAYDRAAFKLRG 153 7********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 102 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.671 | 103 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 103 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-23 | 103 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-14 | 103 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.54E-32 | 103 | 161 | No hit | No description |
PRINTS | PR00367 | 1.5E-13 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASPEETSAL KLIRQHLLTD FASMENFLSN LDNCTSRVSA TNQIPQFVDT KVPKAPQNNS 60 PKQLKQSTLS QRRPSINVEI PPAKVNISSN PAPVESDSNE KRHYRGVRRR PWGKFAAEIR 120 DPNRKGARVW LGTFDTAIEA AKAYDRAAFK LRGSKAILNF PLEAGQSNSA EPELIEDSSS 180 RKRRREKEDE EEESVASKGV KREEVTEEKV VMPVAKETVT VTETVTPGVC LTPSNWTGFW 240 DSEDMKGIFS IPPVEMSKKD TAKGHSTVNK EKLFKGRGSI ISVHKVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 102 | 162 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 184 | RKRRR |
2 | 180 | 186 | RKRRREK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973866.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A061FZV3 | 0.0 | A0A061FZV3_THECC; AP2/ERF domain-containing transcription factor, putative isoform 2 | ||||
STRING | EOY22775 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014847t2 |
Entrez Gene | 18605289 |
Publications ? help Back to Top | |||
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