PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014847t1
Common NameTCM_014847
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 356aa    MW: 39835.3 Da    PI: 8.0429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014847t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20103153255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Thecc1EG014847t1 103 HYRGVRRRP-WGKFAAEIRDP---NrKGARVWLGTFDTAIEAAKAYDRAAFKLRG 153
                       7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-32102162IPR001471AP2/ERF domain
PfamPF008471.4E-14103153IPR001471AP2/ERF domain
PROSITE profilePS5103224.671103161IPR001471AP2/ERF domain
SMARTSM003801.1E-37103167IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23103162IPR016177DNA-binding domain
CDDcd000188.10E-32103161No hitNo description
PRINTSPR003672.2E-13104115IPR001471AP2/ERF domain
PRINTSPR003672.2E-13143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASPEETSAL KLIRQHLLTD FASMENFLSN LDNCTSRVSA TNQIPQFVDT KVPKAPQNNS  60
PKQLKQSTLS QRRPSINVEI PPAKVNISSN PAPVESDSNE KRHYRGVRRR PWGKFAAEIR  120
DPNRKGARVW LGTFDTAIEA AKAYDRAAFK LRGSKAILNF PLEAGQSNSA EPELIEDSSS  180
RKRRREKEDE EEESVASKGV KREEVTEEKV VMPVAKETVT VTETVTPGVC LTPSNWTGFW  240
DSEDMKGIFS IPPERLLKEM ANLIGIDLMD NNCVREFELS NRKRDLSLLT RLLPIVELDL  300
LLNSFPPISL TRPNEPYWAI SLFVKFTVAS ANEALRGVLP FDGGLNSGVW KLAWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-29102162161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-28102171470ATERF1
3gcc_A1e-28102171470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
2180186RKRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973866.10.0PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLA0A061FZ320.0A0A061FZ32_THECC; Integrase-type DNA-binding superfamily protein, putative isoform 1
STRINGEOY227750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-54ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]