PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014838t2
Common NameTCM_014838
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 325aa    MW: 35593.3 Da    PI: 10.2543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014838t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-1593138247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++WT+eE+ +++ + ++lG+g+W+ I++++ ++Rt+ q+ s+ qky
  Thecc1EG014838t2  93 KPWTEEEHRIFLAGLRKLGKGDWRGISKKFVTTRTPTQVASHAQKY 138
                       58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.71487143IPR017930Myb domain
SuperFamilySSF466891.08E-1689142IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-1790142IPR006447Myb domain, plants
SMARTSM007176.6E-1291141IPR001005SANT/Myb domain
PfamPF002492.4E-1293138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1193137IPR009057Homeodomain-like
CDDcd001672.62E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVKETGRKCS HCGHNGHNSR TCHGKGCVKL FGVNISAVEK QESFMKKSFS MESLRSHHAE  60
YNNNAPSVDD GYLSDGQIHS RKSNAARERK RGKPWTEEEH RIFLAGLRKL GKGDWRGISK  120
KFVTTRTPTQ VASHAQKYFL RQAGNDKKKR RPSLFDMAFQ ELESNASPPG SPAEQTTRDS  180
SDQVKAPSPI ANRFPHLCLD DRPVTSLTAS HSFPTYYHRI QPLQAGGAPN GQVFPEAKMM  240
PSLPFLHAMN YAGLHYGYMA KALGCAPAAH PSGIPSPWSV QHSMFRAGPG ASPAEKDLLE  300
LKIGPPQSSK NTSMLSQASS ISVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KKKRR
2146151KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038262.20.0PREDICTED: uncharacterized protein LOC18605280 isoform X1
TrEMBLA0A061G0760.0A0A061G076_THECC; Myb-like transcription factor family protein, putative isoform 2
STRINGEOY227620.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-68MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]