PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014838t1
Common NameTCM_014838
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 346aa    MW: 37922.1 Da    PI: 10.2402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014838t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-15115160247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++WT+eE+ +++ + ++lG+g+W+ I++++ ++Rt+ q+ s+ qky
  Thecc1EG014838t1 115 KPWTEEEHRIFLAGLRKLGKGDWRGISKKFVTTRTPTQVASHAQKY 160
                       58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.5652944IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.714109165IPR017930Myb domain
SuperFamilySSF466891.22E-16111164IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-17112164IPR006447Myb domain, plants
SMARTSM007176.6E-12113163IPR001005SANT/Myb domain
PfamPF002492.6E-12115160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11115159IPR009057Homeodomain-like
CDDcd001673.07E-10116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MCVCYKPNKV PAPKRGIEGV ERMVKETGRK CSHCGHNGHN SRTCHGKGCV KLFGVNISAV  60
EKQESFMKKS FSMESLRSHH AEYNNNAPSV DDGYLSDGQI HSRKSNAARE RKRGKPWTEE  120
EHRIFLAGLR KLGKGDWRGI SKKFVTTRTP TQVASHAQKY FLRQAGNDKK KRRPSLFDMA  180
FQELESNASP PGSPAEQTTR DSSDQVKAPS PIANRFPHLC LDDRPVTSLT ASHSFPTYYH  240
RIQPLAGGAP NGQVFPEAKM MPSLPFLHAM NYAGLHYGYM AKALGCAPAA HPSGIPSPWS  300
VQHSMFRAGP GASPAEKDLL ELKIGPPQSS KNTSMLSQAS SISVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKKRR
2168173KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286293.10.0probable transcription factor At5g61620
TrEMBLA0A061G0P90.0A0A061G0P9_THECC; Myb-like transcription factor family protein, putative isoform 1
STRINGEOY227620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-68MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]