PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014768t1 | ||||||||
Common Name | TCM_014768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LFY | ||||||||
Protein Properties | Length: 392aa MW: 43761.4 Da PI: 7.2518 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 642.4 | 6.7e-196 | 1 | 377 | 1 | 386 |
FLO_LFY 1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklr......eleelfkayGvryltvakiaelGftvstLvdmkdeel 86 mdpeaf++ +fkwdpr ++a++parl+e a ++p++aaa+aaa+ r ++eelf+ayG+ry+t+akiaelGftvstL++mk+eel Thecc1EG014768t1 1 MDPEAFTTGgFFKWDPRGVVAPTPARLMEAVAP-PQPQTAAAVAAAYMGRaprelgGIEELFQAYGIRYYTAAKIAELGFTVSTLLGMKEEEL 92 9****98876**********9999999866655.55544445455544444567779************************************ PP FLO_LFY 87 ddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeek 179 d++m+s+s+ifr++llvGeryGikaavraerrrleee+ ++rr+l+s d+++aldalsqeglseepvq+ekeaagsgg+g ++e+v+a Thecc1EG014768t1 93 DEMMNSVSQIFRWELLVGERYGIKAAVRAERRRLEEED--SRRRHLVSGDTTNALDALSQEGLSEEPVQQEKEAAGSGGGG--TWEVVVAGG- 180 ************************************88..99999********************************9999..999999983. PP FLO_LFY 180 kseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiake 272 +kk+ ++rk k+ + e d+++e e ed+e++ +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iake Thecc1EG014768t1 181 -----RKKQ----RRRKGPKK-VVEVDNEDELEGAEDDENGDIGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKE 263 .....2333....33344444.344555666666667777888899*********************************************** PP FLO_LFY 273 rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprL 365 rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnah rL Thecc1EG014768t1 264 RGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHRRL 356 ********************************************************************************************* PP FLO_LFY 366 siWYvPtkLrqLChlerskas 386 +iWYvPtkLrqLCh+er++a+ Thecc1EG014768t1 357 AIWYVPTKLRQLCHAERNNAA 377 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 3.2E-205 | 1 | 377 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDPEAFTTGG FFKWDPRGVV APTPARLMEA VAPPQPQTAA AVAAAYMGRA PRELGGIEEL 60 FQAYGIRYYT AAKIAELGFT VSTLLGMKEE ELDEMMNSVS QIFRWELLVG ERYGIKAAVR 120 AERRRLEEED SRRRHLVSGD TTNALDALSQ EGLSEEPVQQ EKEAAGSGGG GTWEVVVAGG 180 RKKQRRRKGP KKVVEVDNED ELEGAEDDEN GDIGGYERQR EHPFIVTEPG EVARGKKNGL 240 DYLFHLYEQC REFLIQVQNI AKERGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY 300 ALHCLDEEAS NALRRAFKER GENVGAWRQA CYKPLVAIAA RQGWDIDAIF NAHRRLAIWY 360 VPTKLRQLCH AERNNAAASS SVSGGPDHMA F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 215 | 375 | 2 | 162 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 215 | 375 | 2 | 162 | PROTEIN LEAFY |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 186 | RKKQRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ149725 | 1e-140 | DQ149725.1 Theobroma cacao LEAFY (LEAFY) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038161.1 | 0.0 | PREDICTED: floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A061G0H3 | 0.0 | A0A061G0H3_THECC; Floricaula/leafy | ||||
STRING | EOY22662 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7907 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-160 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014768t1 |
Entrez Gene | 18605213 |
Publications ? help Back to Top | |||
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