PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014729t1

Common Name

TCM_014729

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 349aa MW: 39081 Da PI: 8.1307

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014729t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thecc1EG014729t1 179 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 226 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-17	173	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.62E-10	173	230	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-16	175	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.739	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	179	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAAFSFQPHP FLLDSIFLPN TPTKVSGFME EGNINSNCFS QFYPPEPIQE SPLDPKFHES 60 SCLDHSSKLA HSDNEPSVTK KQSTDDSTVV DKLESGEQVT QNVTLTDRKR KTRSRTTLNS 120 AQSKDAKEGK SKKQRKRNDV LKNEKKESKA DKKDQKKATE EPPTGYIHVR ARRGQATDSH 180 SLAERVRREK ISERMKILQR LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN 240 PMFYDFGVDL EALMVRPERV NGSIASPLPS LQQCNPTQPT AFADTTTTTF VPANNYPLLD 300 ASAALLLQQG QRPNVFSQDN GSLLWDVEDQ RQKFLNSSGL NDNLCCFH*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAAFSFQPHP FLLDSIFLPN TPTKVSGFME EGNINSNCFS QFYPPEPIQE SPLDPKFHES  60
SCLDHSSKLA HSDNEPSVTK KQSTDDSTVV DKLESGEQVT QNVTLTDRKR KTRSRTTLNS  120
AQSKDAKEGK SKKQRKRNDV LKNEKKESKA DKKDQKKATE EPPTGYIHVR ARRGQATDSH  180
SLAERVRREK ISERMKILQR LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN  240
PMFYDFGVDL EALMVRPERV NGSIASPLPS LQQCNPTQPT AFADTTTTTF VPANNYPLLD  300
ASAALLLQQG QRPNVFSQDN GSLLWDVEDQ RQKFLNSSGL NDNLCCFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038100.1	0.0	PREDICTED: transcription factor bHLH137
Refseq	XP_007038102.2	0.0	PREDICTED: transcription factor bHLH137
TrEMBL	A0A061G091	0.0	A0A061G091_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY22603	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG014729t1
Entrez Gene	18605182

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]